Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3819 and HP15_3820 are separated by 232 nucleotides HP15_3820 and HP15_3821 are separated by 162 nucleotides HP15_3821 and HP15_3822 are separated by 3 nucleotides
HP15_3819: HP15_3819 - transcriptional regulator, DeoR, predicted, at 4,044,951 to 4,045,892
_3819
HP15_3820: HP15_3820 - major facilitator superfamily MFS_1, at 4,046,125 to 4,047,408
_3820
HP15_3821: HP15_3821 - transcriptional regulator, MarR family, at 4,047,571 to 4,047,996
_3821
HP15_3822: HP15_3822 - drug resistance transporter, EmrB/QacA family, at 4,048,000 to 4,049,391
_3822
Position (kb)
4046
4047
4048 Strain fitness (log2 ratio)
-1
0
1
2 at 4045.131 kb on + strand, within HP15_3819 at 4045.382 kb on - strand, within HP15_3819 at 4045.606 kb on + strand, within HP15_3819 at 4045.774 kb on + strand, within HP15_3819 at 4045.917 kb on - strand at 4046.009 kb on + strand at 4046.029 kb on + strand at 4046.037 kb on - strand at 4046.056 kb on + strand at 4046.056 kb on + strand at 4046.117 kb on - strand at 4046.117 kb on - strand at 4046.141 kb on + strand at 4046.178 kb on + strand at 4046.186 kb on - strand at 4046.213 kb on + strand at 4046.268 kb on + strand, within HP15_3820 at 4046.299 kb on - strand, within HP15_3820 at 4046.306 kb on - strand, within HP15_3820 at 4046.350 kb on + strand, within HP15_3820 at 4046.382 kb on + strand, within HP15_3820 at 4046.670 kb on + strand, within HP15_3820 at 4046.688 kb on - strand, within HP15_3820 at 4046.748 kb on + strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.816 kb on + strand, within HP15_3820 at 4046.922 kb on + strand, within HP15_3820 at 4046.960 kb on + strand, within HP15_3820 at 4046.960 kb on + strand, within HP15_3820 at 4046.991 kb on + strand, within HP15_3820 at 4046.999 kb on - strand, within HP15_3820 at 4047.001 kb on + strand, within HP15_3820 at 4047.015 kb on + strand, within HP15_3820 at 4047.024 kb on + strand, within HP15_3820 at 4047.119 kb on - strand, within HP15_3820 at 4047.119 kb on - strand, within HP15_3820 at 4047.165 kb on + strand, within HP15_3820 at 4047.259 kb on - strand, within HP15_3820 at 4047.285 kb on - strand at 4047.383 kb on + strand at 4047.715 kb on - strand, within HP15_3821 at 4047.715 kb on - strand, within HP15_3821 at 4047.774 kb on - strand, within HP15_3821 at 4047.776 kb on + strand, within HP15_3821 at 4047.776 kb on + strand, within HP15_3821 at 4047.784 kb on - strand, within HP15_3821 at 4047.896 kb on - strand, within HP15_3821 at 4047.934 kb on - strand, within HP15_3821 at 4047.975 kb on - strand at 4048.055 kb on + strand at 4048.073 kb on - strand at 4048.093 kb on + strand at 4048.106 kb on + strand at 4048.216 kb on - strand, within HP15_3822 at 4048.241 kb on + strand, within HP15_3822 at 4048.242 kb on + strand, within HP15_3822 at 4048.280 kb on + strand, within HP15_3822 at 4048.337 kb on - strand, within HP15_3822 at 4048.377 kb on + strand, within HP15_3822 at 4048.385 kb on - strand, within HP15_3822
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 4,045,131 + HP15_3819 0.19 +0.3 4,045,382 - HP15_3819 0.46 -0.4 4,045,606 + HP15_3819 0.70 -0.3 4,045,774 + HP15_3819 0.87 -0.3 4,045,917 - +0.8 4,046,009 + +0.2 4,046,029 + +1.1 4,046,037 - +0.9 4,046,056 + -0.5 4,046,056 + -0.4 4,046,117 - +0.3 4,046,117 - +0.1 4,046,141 + -0.1 4,046,178 + +0.4 4,046,186 - +1.1 4,046,213 + -0.4 4,046,268 + HP15_3820 0.11 +0.9 4,046,299 - HP15_3820 0.14 +0.4 4,046,306 - HP15_3820 0.14 +0.4 4,046,350 + HP15_3820 0.18 +0.4 4,046,382 + HP15_3820 0.20 +0.2 4,046,670 + HP15_3820 0.42 -0.5 4,046,688 - HP15_3820 0.44 +0.6 4,046,748 + HP15_3820 0.49 -0.7 4,046,803 - HP15_3820 0.53 +0.2 4,046,803 - HP15_3820 0.53 -0.5 4,046,816 + HP15_3820 0.54 +0.7 4,046,922 + HP15_3820 0.62 +0.8 4,046,960 + HP15_3820 0.65 +0.7 4,046,960 + HP15_3820 0.65 +0.4 4,046,991 + HP15_3820 0.67 +1.0 4,046,999 - HP15_3820 0.68 -0.0 4,047,001 + HP15_3820 0.68 +0.7 4,047,015 + HP15_3820 0.69 +0.8 4,047,024 + HP15_3820 0.70 +1.8 4,047,119 - HP15_3820 0.77 +0.9 4,047,119 - HP15_3820 0.77 +0.5 4,047,165 + HP15_3820 0.81 +0.8 4,047,259 - HP15_3820 0.88 -1.2 4,047,285 - -1.0 4,047,383 + +0.4 4,047,715 - HP15_3821 0.34 -0.2 4,047,715 - HP15_3821 0.34 +0.4 4,047,774 - HP15_3821 0.48 -0.4 4,047,776 + HP15_3821 0.48 -1.4 4,047,776 + HP15_3821 0.48 +1.2 4,047,784 - HP15_3821 0.50 -0.3 4,047,896 - HP15_3821 0.76 -0.1 4,047,934 - HP15_3821 0.85 -0.2 4,047,975 - +0.2 4,048,055 + -0.3 4,048,073 - -0.6 4,048,093 + -0.5 4,048,106 + -0.4 4,048,216 - HP15_3822 0.16 +0.1 4,048,241 + HP15_3822 0.17 -0.0 4,048,242 + HP15_3822 0.17 +0.1 4,048,280 + HP15_3822 0.20 -0.3 4,048,337 - HP15_3822 0.24 -0.4 4,048,377 + HP15_3822 0.27 -0.5 4,048,385 - HP15_3822 0.28 +0.3
Or see this region's nucleotide sequence