Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00170 and PGA1_78p00180 overlap by 8 nucleotides PGA1_78p00180 and PGA1_78p00190 are separated by 6 nucleotides PGA1_78p00190 and PGA1_78p00200 are separated by 20 nucleotides PGA1_78p00200 and PGA1_78p00210 are separated by 9 nucleotides
PGA1_78p00170: PGA1_78p00170 - putative sn-glycerol-3-phosphate transport system permease protein UgpA, at 20,341 to 21,273
_78p00170
PGA1_78p00180: PGA1_78p00180 - putative sn-glycerol-3-phosphate transport system permease protein UgpE, at 21,266 to 22,195
_78p00180
PGA1_78p00190: PGA1_78p00190 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 22,202 to 23,287
_78p00190
PGA1_78p00200: PGA1_78p00200 - Sugar phosphate isomerases/epimerases, at 23,308 to 24,051
_78p00200
PGA1_78p00210: PGA1_78p00210 - putative oxidoreductase, at 24,061 to 25,194
_78p00210
Position (kb) 22
23
24 Strain fitness (log2 ratio) -1
0
1
2 at 21.439 kb on + strand, within PGA1_78p00180 at 21.517 kb on + strand, within PGA1_78p00180 at 21.554 kb on + strand, within PGA1_78p00180 at 21.753 kb on + strand, within PGA1_78p00180 at 22.116 kb on + strand at 22.192 kb on - strand at 22.427 kb on - strand, within PGA1_78p00190 at 22.499 kb on + strand, within PGA1_78p00190 at 22.861 kb on - strand, within PGA1_78p00190 at 23.154 kb on - strand, within PGA1_78p00190 at 23.781 kb on - strand, within PGA1_78p00200 at 23.786 kb on - strand, within PGA1_78p00200 at 24.221 kb on + strand, within PGA1_78p00210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 21,439 + PGA1_78p00180 0.19 +0.2 21,517 + PGA1_78p00180 0.27 +0.2 21,554 + PGA1_78p00180 0.31 +1.2 21,753 + PGA1_78p00180 0.52 +1.8 22,116 + +0.4 22,192 - +1.0 22,427 - PGA1_78p00190 0.21 -0.8 22,499 + PGA1_78p00190 0.27 +0.2 22,861 - PGA1_78p00190 0.61 -0.2 23,154 - PGA1_78p00190 0.88 +0.2 23,781 - PGA1_78p00200 0.64 -0.4 23,786 - PGA1_78p00200 0.64 -0.6 24,221 + PGA1_78p00210 0.14 +0.2
Or see this region's nucleotide sequence