Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00400 and PGA1_262p00410 are separated by 11 nucleotides PGA1_262p00410 and PGA1_262p00420 overlap by 11 nucleotides
PGA1_262p00400: PGA1_262p00400 - putative cytochrome c peroxidase, at 47,516 to 48,868
_262p00400
PGA1_262p00410: PGA1_262p00410 - ASPIC and UnbV., at 48,880 to 50,436
_262p00410
PGA1_262p00420: PGA1_262p00420 - Transcriptional regulator/sugar kinase, at 50,426 to 51,640
_262p00420
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 47.881 kb on - strand, within PGA1_262p00400 at 48.265 kb on - strand, within PGA1_262p00400 at 48.426 kb on - strand, within PGA1_262p00400 at 48.885 kb on - strand at 49.066 kb on + strand, within PGA1_262p00410 at 49.089 kb on - strand, within PGA1_262p00410 at 49.091 kb on + strand, within PGA1_262p00410 at 49.133 kb on - strand, within PGA1_262p00410 at 49.185 kb on + strand, within PGA1_262p00410 at 49.233 kb on + strand, within PGA1_262p00410 at 49.312 kb on + strand, within PGA1_262p00410 at 49.626 kb on - strand, within PGA1_262p00410 at 49.720 kb on - strand, within PGA1_262p00410 at 49.805 kb on + strand, within PGA1_262p00410 at 49.905 kb on - strand, within PGA1_262p00410 at 49.909 kb on - strand, within PGA1_262p00410 at 50.043 kb on - strand, within PGA1_262p00410 at 50.149 kb on + strand, within PGA1_262p00410 at 50.361 kb on + strand at 50.378 kb on + strand at 50.423 kb on + strand at 50.424 kb on + strand at 50.556 kb on + strand, within PGA1_262p00420 at 50.642 kb on + strand, within PGA1_262p00420 at 50.959 kb on - strand, within PGA1_262p00420 at 51.165 kb on - strand, within PGA1_262p00420 at 51.203 kb on + strand, within PGA1_262p00420 at 51.211 kb on - strand, within PGA1_262p00420 at 51.224 kb on + strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.409 kb on + strand, within PGA1_262p00420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 47,881 - PGA1_262p00400 0.27 -1.6 48,265 - PGA1_262p00400 0.55 +0.4 48,426 - PGA1_262p00400 0.67 +0.3 48,885 - -0.2 49,066 + PGA1_262p00410 0.12 -3.4 49,089 - PGA1_262p00410 0.13 +0.6 49,091 + PGA1_262p00410 0.14 -1.6 49,133 - PGA1_262p00410 0.16 -0.1 49,185 + PGA1_262p00410 0.20 -1.2 49,233 + PGA1_262p00410 0.23 -0.8 49,312 + PGA1_262p00410 0.28 -0.2 49,626 - PGA1_262p00410 0.48 -0.6 49,720 - PGA1_262p00410 0.54 -1.2 49,805 + PGA1_262p00410 0.59 -0.6 49,905 - PGA1_262p00410 0.66 -0.2 49,909 - PGA1_262p00410 0.66 +1.2 50,043 - PGA1_262p00410 0.75 +1.0 50,149 + PGA1_262p00410 0.82 +0.8 50,361 + +0.4 50,378 + +0.2 50,423 + -1.1 50,424 + -0.7 50,556 + PGA1_262p00420 0.11 +0.7 50,642 + PGA1_262p00420 0.18 +0.2 50,959 - PGA1_262p00420 0.44 +0.2 51,165 - PGA1_262p00420 0.61 -0.6 51,203 + PGA1_262p00420 0.64 -1.6 51,211 - PGA1_262p00420 0.65 +0.8 51,224 + PGA1_262p00420 0.66 -0.6 51,387 - PGA1_262p00420 0.79 -0.4 51,387 - PGA1_262p00420 0.79 +0.4 51,409 + PGA1_262p00420 0.81 -1.2
Or see this region's nucleotide sequence