Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3342 and HP15_3343 are separated by 173 nucleotides HP15_3343 and HP15_3344 are separated by 89 nucleotides HP15_3344 and HP15_3345 are separated by 207 nucleotides
HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527
_3342
HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967
_3343
HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616
_3344
HP15_3345: HP15_3345 - GGDEF domain protein, at 3,506,824 to 3,507,927
_3345
Position (kb)
3505
3506
3507 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3504.523 kb on + strand at 3504.530 kb on - strand at 3504.645 kb on + strand at 3504.696 kb on - strand at 3504.894 kb on + strand, within HP15_3343 at 3504.989 kb on + strand at 3504.989 kb on + strand at 3505.121 kb on - strand at 3505.208 kb on + strand at 3505.208 kb on + strand at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.343 kb on + strand, within HP15_3344 at 3505.432 kb on + strand, within HP15_3344 at 3505.457 kb on + strand, within HP15_3344 at 3505.490 kb on + strand, within HP15_3344 at 3505.504 kb on + strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.548 kb on + strand, within HP15_3344 at 3505.575 kb on + strand, within HP15_3344 at 3505.589 kb on - strand, within HP15_3344 at 3505.674 kb on + strand, within HP15_3344 at 3505.712 kb on + strand, within HP15_3344 at 3505.747 kb on + strand, within HP15_3344 at 3505.817 kb on - strand, within HP15_3344 at 3505.898 kb on + strand, within HP15_3344 at 3506.099 kb on + strand, within HP15_3344 at 3506.271 kb on - strand, within HP15_3344 at 3506.473 kb on - strand at 3506.586 kb on - strand at 3506.586 kb on - strand at 3506.586 kb on - strand at 3506.611 kb on + strand at 3506.611 kb on + strand at 3506.611 kb on + strand at 3506.611 kb on + strand at 3506.619 kb on - strand at 3506.631 kb on + strand at 3506.726 kb on + strand at 3506.976 kb on - strand, within HP15_3345 at 3507.007 kb on + strand, within HP15_3345 at 3507.092 kb on - strand, within HP15_3345 at 3507.093 kb on - strand, within HP15_3345 at 3507.221 kb on + strand, within HP15_3345 at 3507.258 kb on - strand, within HP15_3345 at 3507.258 kb on - strand, within HP15_3345 at 3507.301 kb on + strand, within HP15_3345 at 3507.301 kb on + strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.375 kb on - strand, within HP15_3345 at 3507.400 kb on + strand, within HP15_3345 at 3507.455 kb on - strand, within HP15_3345 at 3507.500 kb on + strand, within HP15_3345 at 3507.505 kb on + strand, within HP15_3345 at 3507.505 kb on + strand, within HP15_3345 at 3507.515 kb on + strand, within HP15_3345 at 3507.523 kb on - strand, within HP15_3345 at 3507.525 kb on + strand, within HP15_3345
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 3,504,523 + +0.5 3,504,530 - +0.8 3,504,645 + -0.2 3,504,696 - +0.1 3,504,894 + HP15_3343 0.72 -0.6 3,504,989 + -0.7 3,504,989 + -2.2 3,505,121 - -0.9 3,505,208 + -2.3 3,505,208 + -1.4 3,505,216 - HP15_3344 0.10 -1.9 3,505,216 - HP15_3344 0.10 -2.7 3,505,216 - HP15_3344 0.10 -1.8 3,505,343 + HP15_3344 0.18 -2.8 3,505,432 + HP15_3344 0.24 -3.2 3,505,457 + HP15_3344 0.26 -2.8 3,505,490 + HP15_3344 0.28 -2.1 3,505,504 + HP15_3344 0.29 -1.8 3,505,507 - HP15_3344 0.29 -1.7 3,505,507 - HP15_3344 0.29 -1.4 3,505,548 + HP15_3344 0.31 -2.4 3,505,575 + HP15_3344 0.33 -0.9 3,505,589 - HP15_3344 0.34 -1.4 3,505,674 + HP15_3344 0.40 -0.4 3,505,712 + HP15_3344 0.42 -2.3 3,505,747 + HP15_3344 0.44 -1.2 3,505,817 - HP15_3344 0.49 -1.9 3,505,898 + HP15_3344 0.54 -3.1 3,506,099 + HP15_3344 0.67 -1.8 3,506,271 - HP15_3344 0.78 -1.5 3,506,473 - -3.8 3,506,586 - -1.0 3,506,586 - -1.1 3,506,586 - -2.7 3,506,611 + -2.3 3,506,611 + -0.9 3,506,611 + -1.5 3,506,611 + -2.0 3,506,619 - -2.2 3,506,631 + +0.1 3,506,726 + -1.2 3,506,976 - HP15_3345 0.14 +0.2 3,507,007 + HP15_3345 0.17 -0.2 3,507,092 - HP15_3345 0.24 +0.4 3,507,093 - HP15_3345 0.24 +0.1 3,507,221 + HP15_3345 0.36 +0.4 3,507,258 - HP15_3345 0.39 -0.0 3,507,258 - HP15_3345 0.39 +0.1 3,507,301 + HP15_3345 0.43 +0.5 3,507,301 + HP15_3345 0.43 +0.2 3,507,309 - HP15_3345 0.44 -0.9 3,507,309 - HP15_3345 0.44 -0.5 3,507,309 - HP15_3345 0.44 +0.5 3,507,375 - HP15_3345 0.50 +0.7 3,507,400 + HP15_3345 0.52 +0.3 3,507,455 - HP15_3345 0.57 +0.2 3,507,500 + HP15_3345 0.61 +1.1 3,507,505 + HP15_3345 0.62 -0.9 3,507,505 + HP15_3345 0.62 -0.6 3,507,515 + HP15_3345 0.63 +0.9 3,507,523 - HP15_3345 0.63 +0.0 3,507,525 + HP15_3345 0.63 +0.2
Or see this region's nucleotide sequence