Strain Fitness in Marinobacter adhaerens HP15 around HP15_3344

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3342 and HP15_3343 are separated by 173 nucleotidesHP15_3343 and HP15_3344 are separated by 89 nucleotidesHP15_3344 and HP15_3345 are separated by 207 nucleotides HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527 _3342 HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967 _3343 HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616 _3344 HP15_3345: HP15_3345 - GGDEF domain protein, at 3,506,824 to 3,507,927 _3345 Position (kb) 3505 3506 3507Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3504.523 kb on + strandat 3504.530 kb on - strandat 3504.645 kb on + strandat 3504.696 kb on - strandat 3504.894 kb on + strand, within HP15_3343at 3504.989 kb on + strandat 3504.989 kb on + strandat 3505.121 kb on - strandat 3505.208 kb on + strandat 3505.208 kb on + strandat 3505.216 kb on - strand, within HP15_3344at 3505.216 kb on - strand, within HP15_3344at 3505.216 kb on - strand, within HP15_3344at 3505.343 kb on + strand, within HP15_3344at 3505.432 kb on + strand, within HP15_3344at 3505.457 kb on + strand, within HP15_3344at 3505.490 kb on + strand, within HP15_3344at 3505.504 kb on + strand, within HP15_3344at 3505.507 kb on - strand, within HP15_3344at 3505.507 kb on - strand, within HP15_3344at 3505.548 kb on + strand, within HP15_3344at 3505.575 kb on + strand, within HP15_3344at 3505.589 kb on - strand, within HP15_3344at 3505.674 kb on + strand, within HP15_3344at 3505.712 kb on + strand, within HP15_3344at 3505.747 kb on + strand, within HP15_3344at 3505.817 kb on - strand, within HP15_3344at 3505.898 kb on + strand, within HP15_3344at 3506.099 kb on + strand, within HP15_3344at 3506.271 kb on - strand, within HP15_3344at 3506.473 kb on - strandat 3506.586 kb on - strandat 3506.586 kb on - strandat 3506.586 kb on - strandat 3506.611 kb on + strandat 3506.611 kb on + strandat 3506.611 kb on + strandat 3506.611 kb on + strandat 3506.619 kb on - strandat 3506.631 kb on + strandat 3506.726 kb on + strandat 3506.976 kb on - strand, within HP15_3345at 3507.007 kb on + strand, within HP15_3345at 3507.092 kb on - strand, within HP15_3345at 3507.093 kb on - strand, within HP15_3345at 3507.221 kb on + strand, within HP15_3345at 3507.258 kb on - strand, within HP15_3345at 3507.258 kb on - strand, within HP15_3345at 3507.301 kb on + strand, within HP15_3345at 3507.301 kb on + strand, within HP15_3345at 3507.309 kb on - strand, within HP15_3345at 3507.309 kb on - strand, within HP15_3345at 3507.309 kb on - strand, within HP15_3345at 3507.375 kb on - strand, within HP15_3345at 3507.400 kb on + strand, within HP15_3345at 3507.455 kb on - strand, within HP15_3345at 3507.500 kb on + strand, within HP15_3345at 3507.505 kb on + strand, within HP15_3345at 3507.505 kb on + strand, within HP15_3345at 3507.515 kb on + strand, within HP15_3345at 3507.523 kb on - strand, within HP15_3345at 3507.525 kb on + strand, within HP15_3345

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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3,504,523 + +0.5
3,504,530 - +0.8
3,504,645 + -0.2
3,504,696 - +0.1
3,504,894 + HP15_3343 0.72 -0.6
3,504,989 + -0.7
3,504,989 + -2.2
3,505,121 - -0.9
3,505,208 + -2.3
3,505,208 + -1.4
3,505,216 - HP15_3344 0.10 -1.9
3,505,216 - HP15_3344 0.10 -2.7
3,505,216 - HP15_3344 0.10 -1.8
3,505,343 + HP15_3344 0.18 -2.8
3,505,432 + HP15_3344 0.24 -3.2
3,505,457 + HP15_3344 0.26 -2.8
3,505,490 + HP15_3344 0.28 -2.1
3,505,504 + HP15_3344 0.29 -1.8
3,505,507 - HP15_3344 0.29 -1.7
3,505,507 - HP15_3344 0.29 -1.4
3,505,548 + HP15_3344 0.31 -2.4
3,505,575 + HP15_3344 0.33 -0.9
3,505,589 - HP15_3344 0.34 -1.4
3,505,674 + HP15_3344 0.40 -0.4
3,505,712 + HP15_3344 0.42 -2.3
3,505,747 + HP15_3344 0.44 -1.2
3,505,817 - HP15_3344 0.49 -1.9
3,505,898 + HP15_3344 0.54 -3.1
3,506,099 + HP15_3344 0.67 -1.8
3,506,271 - HP15_3344 0.78 -1.5
3,506,473 - -3.8
3,506,586 - -1.0
3,506,586 - -1.1
3,506,586 - -2.7
3,506,611 + -2.3
3,506,611 + -0.9
3,506,611 + -1.5
3,506,611 + -2.0
3,506,619 - -2.2
3,506,631 + +0.1
3,506,726 + -1.2
3,506,976 - HP15_3345 0.14 +0.2
3,507,007 + HP15_3345 0.17 -0.2
3,507,092 - HP15_3345 0.24 +0.4
3,507,093 - HP15_3345 0.24 +0.1
3,507,221 + HP15_3345 0.36 +0.4
3,507,258 - HP15_3345 0.39 -0.0
3,507,258 - HP15_3345 0.39 +0.1
3,507,301 + HP15_3345 0.43 +0.5
3,507,301 + HP15_3345 0.43 +0.2
3,507,309 - HP15_3345 0.44 -0.9
3,507,309 - HP15_3345 0.44 -0.5
3,507,309 - HP15_3345 0.44 +0.5
3,507,375 - HP15_3345 0.50 +0.7
3,507,400 + HP15_3345 0.52 +0.3
3,507,455 - HP15_3345 0.57 +0.2
3,507,500 + HP15_3345 0.61 +1.1
3,507,505 + HP15_3345 0.62 -0.9
3,507,505 + HP15_3345 0.62 -0.6
3,507,515 + HP15_3345 0.63 +0.9
3,507,523 - HP15_3345 0.63 +0.0
3,507,525 + HP15_3345 0.63 +0.2

Or see this region's nucleotide sequence