Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33040 and PGA1_c33050 are separated by 76 nucleotides PGA1_c33050 and PGA1_c33055 are separated by 50 nucleotides PGA1_c33055 and PGA1_c33060 are separated by 58 nucleotides PGA1_c33060 and PGA1_c33070 are separated by 70 nucleotides PGA1_c33070 and PGA1_c33080 are separated by 12 nucleotides
PGA1_c33040: PGA1_c33040 - aldehyde dehydrogenase, at 3,462,564 to 3,464,003
_c33040
PGA1_c33050: PGA1_c33050 - hypothetical protein, at 3,464,080 to 3,464,553
_c33050
PGA1_c33055: PGA1_c33055 - hypothetical protein, at 3,464,604 to 3,464,855
_c33055
PGA1_c33060: PGA1_c33060 - glyoxalase-like protein, at 3,464,914 to 3,465,417
_c33060
PGA1_c33070: PGA1_c33070 - Glycosyl transferase family 11., at 3,465,488 to 3,466,345
_c33070
PGA1_c33080: PGA1_c33080 - ribosomal large subunit pseudouridine synthase A, at 3,466,358 to 3,467,011
_c33080
Position (kb)
3464
3465
3466 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3463.970 kb on + strand at 3464.018 kb on + strand at 3464.026 kb on - strand at 3464.066 kb on - strand at 3464.084 kb on - strand at 3464.084 kb on - strand at 3464.084 kb on - strand at 3464.084 kb on - strand at 3464.084 kb on - strand at 3464.102 kb on + strand at 3464.138 kb on - strand, within PGA1_c33050 at 3464.244 kb on + strand, within PGA1_c33050 at 3464.253 kb on - strand, within PGA1_c33050 at 3464.253 kb on - strand, within PGA1_c33050 at 3464.292 kb on + strand, within PGA1_c33050 at 3464.292 kb on + strand, within PGA1_c33050 at 3464.300 kb on + strand, within PGA1_c33050 at 3464.300 kb on + strand, within PGA1_c33050 at 3464.300 kb on - strand, within PGA1_c33050 at 3464.300 kb on - strand, within PGA1_c33050 at 3464.300 kb on - strand, within PGA1_c33050 at 3464.300 kb on - strand, within PGA1_c33050 at 3464.300 kb on - strand, within PGA1_c33050 at 3464.300 kb on - strand, within PGA1_c33050 at 3464.300 kb on - strand, within PGA1_c33050 at 3464.313 kb on - strand, within PGA1_c33050 at 3464.385 kb on + strand, within PGA1_c33050 at 3464.385 kb on + strand, within PGA1_c33050 at 3464.386 kb on - strand, within PGA1_c33050 at 3464.456 kb on + strand, within PGA1_c33050 at 3464.462 kb on - strand, within PGA1_c33050 at 3464.466 kb on + strand, within PGA1_c33050 at 3464.501 kb on - strand, within PGA1_c33050 at 3464.534 kb on + strand at 3464.608 kb on + strand at 3464.656 kb on + strand, within PGA1_c33055 at 3464.668 kb on + strand, within PGA1_c33055 at 3464.702 kb on + strand, within PGA1_c33055 at 3464.703 kb on + strand, within PGA1_c33055 at 3464.703 kb on + strand, within PGA1_c33055 at 3464.709 kb on + strand, within PGA1_c33055 at 3464.710 kb on - strand, within PGA1_c33055 at 3464.741 kb on - strand, within PGA1_c33055 at 3464.777 kb on + strand, within PGA1_c33055 at 3464.782 kb on + strand, within PGA1_c33055 at 3464.806 kb on + strand, within PGA1_c33055 at 3464.814 kb on - strand, within PGA1_c33055 at 3464.837 kb on - strand at 3464.842 kb on + strand at 3464.842 kb on + strand at 3464.863 kb on - strand at 3464.865 kb on + strand at 3464.896 kb on + strand at 3464.896 kb on + strand at 3464.896 kb on + strand at 3464.904 kb on - strand at 3464.904 kb on - strand at 3464.914 kb on - strand at 3464.923 kb on - strand at 3464.929 kb on - strand at 3464.953 kb on + strand at 3464.962 kb on + strand at 3464.963 kb on - strand at 3464.970 kb on - strand, within PGA1_c33060 at 3465.041 kb on + strand, within PGA1_c33060 at 3465.049 kb on - strand, within PGA1_c33060 at 3465.049 kb on - strand, within PGA1_c33060 at 3465.049 kb on - strand, within PGA1_c33060 at 3465.053 kb on + strand, within PGA1_c33060 at 3465.134 kb on + strand, within PGA1_c33060 at 3465.134 kb on + strand, within PGA1_c33060 at 3465.142 kb on - strand, within PGA1_c33060 at 3465.147 kb on + strand, within PGA1_c33060 at 3465.181 kb on - strand, within PGA1_c33060 at 3465.188 kb on - strand, within PGA1_c33060 at 3465.213 kb on + strand, within PGA1_c33060 at 3465.276 kb on + strand, within PGA1_c33060 at 3465.407 kb on - strand at 3465.417 kb on + strand at 3465.422 kb on + strand at 3465.432 kb on + strand at 3465.518 kb on - strand at 3465.869 kb on + strand, within PGA1_c33070 at 3465.925 kb on - strand, within PGA1_c33070 at 3465.926 kb on + strand, within PGA1_c33070 at 3466.114 kb on - strand, within PGA1_c33070 at 3466.221 kb on + strand, within PGA1_c33070 at 3466.226 kb on - strand, within PGA1_c33070 at 3466.241 kb on - strand, within PGA1_c33070 at 3466.364 kb on - strand at 3466.364 kb on - strand at 3466.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,463,970 + +0.8 3,464,018 + -0.0 3,464,026 - +1.1 3,464,066 - -0.5 3,464,084 - -0.9 3,464,084 - -0.3 3,464,084 - +0.2 3,464,084 - -0.1 3,464,084 - -1.9 3,464,102 + -0.3 3,464,138 - PGA1_c33050 0.12 +0.7 3,464,244 + PGA1_c33050 0.35 +0.0 3,464,253 - PGA1_c33050 0.36 +1.1 3,464,253 - PGA1_c33050 0.36 +0.2 3,464,292 + PGA1_c33050 0.45 +1.0 3,464,292 + PGA1_c33050 0.45 -0.5 3,464,300 + PGA1_c33050 0.46 +0.7 3,464,300 + PGA1_c33050 0.46 +0.7 3,464,300 - PGA1_c33050 0.46 +0.4 3,464,300 - PGA1_c33050 0.46 -0.0 3,464,300 - PGA1_c33050 0.46 +0.3 3,464,300 - PGA1_c33050 0.46 +1.0 3,464,300 - PGA1_c33050 0.46 -0.9 3,464,300 - PGA1_c33050 0.46 -0.9 3,464,300 - PGA1_c33050 0.46 +0.7 3,464,313 - PGA1_c33050 0.49 -0.8 3,464,385 + PGA1_c33050 0.64 +1.0 3,464,385 + PGA1_c33050 0.64 +0.1 3,464,386 - PGA1_c33050 0.65 -1.3 3,464,456 + PGA1_c33050 0.79 +0.7 3,464,462 - PGA1_c33050 0.81 +0.7 3,464,466 + PGA1_c33050 0.81 -1.6 3,464,501 - PGA1_c33050 0.89 -0.0 3,464,534 + -1.3 3,464,608 + -0.4 3,464,656 + PGA1_c33055 0.21 -0.8 3,464,668 + PGA1_c33055 0.25 -0.5 3,464,702 + PGA1_c33055 0.39 +1.1 3,464,703 + PGA1_c33055 0.39 +0.4 3,464,703 + PGA1_c33055 0.39 +0.2 3,464,709 + PGA1_c33055 0.42 -0.3 3,464,710 - PGA1_c33055 0.42 -0.3 3,464,741 - PGA1_c33055 0.54 -0.5 3,464,777 + PGA1_c33055 0.69 -0.5 3,464,782 + PGA1_c33055 0.71 +1.2 3,464,806 + PGA1_c33055 0.80 -0.5 3,464,814 - PGA1_c33055 0.83 +0.8 3,464,837 - -0.0 3,464,842 + -1.3 3,464,842 + -0.6 3,464,863 - -1.1 3,464,865 + -0.1 3,464,896 + -0.6 3,464,896 + -1.6 3,464,896 + -0.3 3,464,904 - -0.4 3,464,904 - -0.0 3,464,914 - +0.7 3,464,923 - +2.1 3,464,929 - +0.9 3,464,953 + +0.1 3,464,962 + -0.4 3,464,963 - +0.2 3,464,970 - PGA1_c33060 0.11 -0.3 3,465,041 + PGA1_c33060 0.25 +0.3 3,465,049 - PGA1_c33060 0.27 +1.2 3,465,049 - PGA1_c33060 0.27 +0.6 3,465,049 - PGA1_c33060 0.27 -0.8 3,465,053 + PGA1_c33060 0.28 -1.0 3,465,134 + PGA1_c33060 0.44 -1.2 3,465,134 + PGA1_c33060 0.44 -1.0 3,465,142 - PGA1_c33060 0.45 +0.0 3,465,147 + PGA1_c33060 0.46 +0.2 3,465,181 - PGA1_c33060 0.53 -0.9 3,465,188 - PGA1_c33060 0.54 -1.5 3,465,213 + PGA1_c33060 0.59 -0.1 3,465,276 + PGA1_c33060 0.72 -0.3 3,465,407 - +0.0 3,465,417 + -0.6 3,465,422 + +0.7 3,465,432 + -1.5 3,465,518 - -1.6 3,465,869 + PGA1_c33070 0.44 -1.7 3,465,925 - PGA1_c33070 0.51 -3.4 3,465,926 + PGA1_c33070 0.51 -2.6 3,466,114 - PGA1_c33070 0.73 -0.7 3,466,221 + PGA1_c33070 0.85 -0.3 3,466,226 - PGA1_c33070 0.86 -0.9 3,466,241 - PGA1_c33070 0.88 -2.6 3,466,364 - -0.2 3,466,364 - -0.2 3,466,408 + +0.1
Or see this region's nucleotide sequence