Strain Fitness in Marinobacter adhaerens HP15 around HP15_2678

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2676 and HP15_2677 are separated by 35 nucleotidesHP15_2677 and HP15_2678 are separated by 78 nucleotidesHP15_2678 and HP15_2679 are separated by 179 nucleotidesHP15_2679 and HP15_2680 are separated by 23 nucleotides HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241 _2676 HP15_2677: HP15_2677 - conserved hypothetical protein, secreted, at 2,826,277 to 2,826,753 _2677 HP15_2678: HP15_2678 - shikimate kinase, at 2,826,832 to 2,827,356 _2678 HP15_2679: HP15_2679 - transglycosylase SLT domain protein, at 2,827,536 to 2,828,237 _2679 HP15_2680: HP15_2680 - protein containing LysR, substrate-binding / Bacterial regulatory protein, LysR, at 2,828,261 to 2,829,193 _2680 Position (kb) 2826 2827 2828Strain fitness (log2 ratio) -2 -1 0 1at 2825.834 kb on - strand, within HP15_2676at 2825.846 kb on - strand, within HP15_2676at 2825.914 kb on + strand, within HP15_2676at 2825.917 kb on - strand, within HP15_2676at 2825.917 kb on - strand, within HP15_2676at 2825.922 kb on - strand, within HP15_2676at 2825.922 kb on - strand, within HP15_2676at 2826.064 kb on + strand, within HP15_2676at 2826.101 kb on - strand, within HP15_2676at 2826.103 kb on + strand, within HP15_2676at 2826.103 kb on + strand, within HP15_2676at 2826.111 kb on - strand, within HP15_2676at 2826.111 kb on - strand, within HP15_2676at 2826.143 kb on + strandat 2826.283 kb on - strandat 2826.307 kb on + strandat 2826.610 kb on - strand, within HP15_2677at 2826.638 kb on - strand, within HP15_2677at 2826.688 kb on - strand, within HP15_2677at 2826.690 kb on + strand, within HP15_2677at 2826.864 kb on - strandat 2827.034 kb on - strand, within HP15_2678at 2827.064 kb on + strand, within HP15_2678at 2827.082 kb on - strand, within HP15_2678at 2827.090 kb on + strand, within HP15_2678at 2827.191 kb on + strand, within HP15_2678at 2827.470 kb on - strandat 2827.544 kb on + strandat 2827.554 kb on + strandat 2827.677 kb on - strand, within HP15_2679at 2827.748 kb on - strand, within HP15_2679at 2827.750 kb on + strand, within HP15_2679at 2827.780 kb on - strand, within HP15_2679at 2827.784 kb on - strand, within HP15_2679at 2827.839 kb on + strand, within HP15_2679at 2827.889 kb on + strand, within HP15_2679at 2827.889 kb on + strand, within HP15_2679at 2827.889 kb on - strand, within HP15_2679at 2827.908 kb on - strand, within HP15_2679at 2827.962 kb on + strand, within HP15_2679at 2828.098 kb on - strand, within HP15_2679at 2828.098 kb on - strand, within HP15_2679at 2828.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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2,825,834 - HP15_2676 0.68 +1.0
2,825,846 - HP15_2676 0.69 +0.1
2,825,914 + HP15_2676 0.74 +0.7
2,825,917 - HP15_2676 0.75 -2.3
2,825,917 - HP15_2676 0.75 +0.7
2,825,922 - HP15_2676 0.75 +0.1
2,825,922 - HP15_2676 0.75 +0.8
2,826,064 + HP15_2676 0.86 +0.9
2,826,101 - HP15_2676 0.89 +0.3
2,826,103 + HP15_2676 0.89 +0.4
2,826,103 + HP15_2676 0.89 +0.8
2,826,111 - HP15_2676 0.90 -0.2
2,826,111 - HP15_2676 0.90 -0.2
2,826,143 + -0.6
2,826,283 - -1.6
2,826,307 + +0.1
2,826,610 - HP15_2677 0.70 +0.0
2,826,638 - HP15_2677 0.76 -0.4
2,826,688 - HP15_2677 0.86 -0.7
2,826,690 + HP15_2677 0.87 -0.3
2,826,864 - -0.1
2,827,034 - HP15_2678 0.38 +0.7
2,827,064 + HP15_2678 0.44 -0.0
2,827,082 - HP15_2678 0.48 +0.2
2,827,090 + HP15_2678 0.49 +0.1
2,827,191 + HP15_2678 0.68 +0.3
2,827,470 - +0.0
2,827,544 + +0.6
2,827,554 + +0.0
2,827,677 - HP15_2679 0.20 -0.7
2,827,748 - HP15_2679 0.30 +1.0
2,827,750 + HP15_2679 0.30 +0.0
2,827,780 - HP15_2679 0.35 -1.6
2,827,784 - HP15_2679 0.35 -0.7
2,827,839 + HP15_2679 0.43 +0.1
2,827,889 + HP15_2679 0.50 -2.6
2,827,889 + HP15_2679 0.50 -0.7
2,827,889 - HP15_2679 0.50 +0.3
2,827,908 - HP15_2679 0.53 -1.1
2,827,962 + HP15_2679 0.61 -1.0
2,828,098 - HP15_2679 0.80 -0.8
2,828,098 - HP15_2679 0.80 -0.1
2,828,176 - -0.6

Or see this region's nucleotide sequence