Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2104 and HP15_2105 are separated by 112 nucleotides HP15_2105 and HP15_2106 are separated by 9 nucleotides HP15_2106 and HP15_2107 are separated by 220 nucleotides
HP15_2104: HP15_2104 - putative RNA 2'-O-ribose methyltransferase, at 2,202,811 to 2,203,887
_2104
HP15_2105: HP15_2105 - response regulator receiver domain protein (CheY-), at 2,204,000 to 2,205,841
_2105
HP15_2106: HP15_2106 - conserved hypothetical protein, at 2,205,851 to 2,206,492
_2106
HP15_2107: HP15_2107 - cytochrome c oxidase, cbb3-type, subunit I, at 2,206,713 to 2,208,143
_2107
Position (kb)
2203
2204
2205
2206 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2203.001 kb on - strand, within HP15_2104 at 2203.002 kb on - strand, within HP15_2104 at 2203.098 kb on - strand, within HP15_2104 at 2203.122 kb on + strand, within HP15_2104 at 2203.130 kb on - strand, within HP15_2104 at 2203.256 kb on - strand, within HP15_2104 at 2203.358 kb on + strand, within HP15_2104 at 2203.431 kb on + strand, within HP15_2104 at 2203.440 kb on - strand, within HP15_2104 at 2203.461 kb on + strand, within HP15_2104 at 2203.461 kb on + strand, within HP15_2104 at 2203.466 kb on + strand, within HP15_2104 at 2203.466 kb on + strand, within HP15_2104 at 2203.474 kb on - strand, within HP15_2104 at 2203.528 kb on + strand, within HP15_2104 at 2203.537 kb on + strand, within HP15_2104 at 2203.709 kb on - strand, within HP15_2104 at 2203.709 kb on - strand, within HP15_2104 at 2203.744 kb on - strand, within HP15_2104 at 2203.857 kb on - strand at 2204.059 kb on - strand at 2204.062 kb on + strand at 2204.070 kb on - strand at 2204.081 kb on + strand at 2204.081 kb on - strand at 2204.238 kb on + strand, within HP15_2105 at 2204.260 kb on + strand, within HP15_2105 at 2204.268 kb on - strand, within HP15_2105 at 2204.285 kb on - strand, within HP15_2105 at 2204.319 kb on + strand, within HP15_2105 at 2204.326 kb on - strand, within HP15_2105 at 2204.582 kb on + strand, within HP15_2105 at 2204.597 kb on - strand, within HP15_2105 at 2204.599 kb on + strand, within HP15_2105 at 2204.602 kb on - strand, within HP15_2105 at 2204.602 kb on - strand, within HP15_2105 at 2204.612 kb on + strand, within HP15_2105 at 2204.620 kb on - strand, within HP15_2105 at 2204.743 kb on - strand, within HP15_2105 at 2204.893 kb on - strand, within HP15_2105 at 2204.916 kb on + strand, within HP15_2105 at 2204.984 kb on - strand, within HP15_2105 at 2205.011 kb on + strand, within HP15_2105 at 2205.076 kb on + strand, within HP15_2105 at 2205.084 kb on - strand, within HP15_2105 at 2205.084 kb on - strand, within HP15_2105 at 2205.112 kb on - strand, within HP15_2105 at 2205.141 kb on - strand, within HP15_2105 at 2205.152 kb on + strand, within HP15_2105 at 2205.182 kb on + strand, within HP15_2105 at 2205.211 kb on + strand, within HP15_2105 at 2205.321 kb on - strand, within HP15_2105 at 2205.407 kb on + strand, within HP15_2105 at 2205.432 kb on + strand, within HP15_2105 at 2205.440 kb on - strand, within HP15_2105 at 2205.440 kb on - strand, within HP15_2105 at 2205.450 kb on - strand, within HP15_2105 at 2205.482 kb on + strand, within HP15_2105 at 2205.512 kb on - strand, within HP15_2105 at 2205.514 kb on - strand, within HP15_2105 at 2205.675 kb on + strand at 2205.683 kb on - strand at 2205.748 kb on - strand at 2205.773 kb on + strand at 2205.773 kb on + strand at 2205.781 kb on - strand at 2205.781 kb on - strand at 2205.781 kb on - strand at 2205.825 kb on - strand at 2205.825 kb on - strand at 2205.846 kb on - strand at 2205.880 kb on - strand at 2206.059 kb on + strand, within HP15_2106 at 2206.208 kb on + strand, within HP15_2106 at 2206.210 kb on + strand, within HP15_2106 at 2206.243 kb on - strand, within HP15_2106 at 2206.530 kb on - strand at 2206.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 2,203,001 - HP15_2104 0.18 +0.3 2,203,002 - HP15_2104 0.18 +0.3 2,203,098 - HP15_2104 0.27 -0.6 2,203,122 + HP15_2104 0.29 -0.1 2,203,130 - HP15_2104 0.30 -0.3 2,203,256 - HP15_2104 0.41 -1.7 2,203,358 + HP15_2104 0.51 -2.1 2,203,431 + HP15_2104 0.58 -0.4 2,203,440 - HP15_2104 0.58 +0.5 2,203,461 + HP15_2104 0.60 +0.1 2,203,461 + HP15_2104 0.60 +0.2 2,203,466 + HP15_2104 0.61 +0.8 2,203,466 + HP15_2104 0.61 +0.1 2,203,474 - HP15_2104 0.62 +0.2 2,203,528 + HP15_2104 0.67 +0.3 2,203,537 + HP15_2104 0.67 +0.3 2,203,709 - HP15_2104 0.83 -0.1 2,203,709 - HP15_2104 0.83 +0.0 2,203,744 - HP15_2104 0.87 -1.5 2,203,857 - +0.2 2,204,059 - +0.8 2,204,062 + +0.0 2,204,070 - -0.5 2,204,081 + -0.8 2,204,081 - -3.3 2,204,238 + HP15_2105 0.13 -1.0 2,204,260 + HP15_2105 0.14 -0.5 2,204,268 - HP15_2105 0.15 -1.2 2,204,285 - HP15_2105 0.15 -0.4 2,204,319 + HP15_2105 0.17 -0.1 2,204,326 - HP15_2105 0.18 -1.4 2,204,582 + HP15_2105 0.32 -1.3 2,204,597 - HP15_2105 0.32 +0.1 2,204,599 + HP15_2105 0.33 -0.4 2,204,602 - HP15_2105 0.33 +0.8 2,204,602 - HP15_2105 0.33 -0.3 2,204,612 + HP15_2105 0.33 -0.3 2,204,620 - HP15_2105 0.34 -0.7 2,204,743 - HP15_2105 0.40 -0.1 2,204,893 - HP15_2105 0.48 +0.1 2,204,916 + HP15_2105 0.50 -0.3 2,204,984 - HP15_2105 0.53 -1.7 2,205,011 + HP15_2105 0.55 +0.1 2,205,076 + HP15_2105 0.58 +0.7 2,205,084 - HP15_2105 0.59 +0.1 2,205,084 - HP15_2105 0.59 -0.0 2,205,112 - HP15_2105 0.60 +1.9 2,205,141 - HP15_2105 0.62 +0.9 2,205,152 + HP15_2105 0.63 +0.2 2,205,182 + HP15_2105 0.64 -0.6 2,205,211 + HP15_2105 0.66 -0.0 2,205,321 - HP15_2105 0.72 +0.1 2,205,407 + HP15_2105 0.76 -0.2 2,205,432 + HP15_2105 0.78 -0.3 2,205,440 - HP15_2105 0.78 +1.2 2,205,440 - HP15_2105 0.78 +0.2 2,205,450 - HP15_2105 0.79 +0.9 2,205,482 + HP15_2105 0.80 +0.3 2,205,512 - HP15_2105 0.82 -0.3 2,205,514 - HP15_2105 0.82 +0.9 2,205,675 + -0.9 2,205,683 - -0.4 2,205,748 - +0.7 2,205,773 + -1.4 2,205,773 + -0.0 2,205,781 - +0.7 2,205,781 - +0.5 2,205,781 - -0.3 2,205,825 - -0.5 2,205,825 - -0.7 2,205,846 - +0.2 2,205,880 - -0.4 2,206,059 + HP15_2106 0.32 -2.7 2,206,208 + HP15_2106 0.56 -0.1 2,206,210 + HP15_2106 0.56 +0.5 2,206,243 - HP15_2106 0.61 +0.2 2,206,530 - +0.0 2,206,634 - -0.4
Or see this region's nucleotide sequence