Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2040 and HP15_2041 are separated by 120 nucleotides HP15_2041 and HP15_2042 are separated by 30 nucleotides HP15_2042 and HP15_2043 are separated by 18 nucleotides HP15_2043 and HP15_2044 are separated by 25 nucleotides
HP15_2040: HP15_2040 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,139,209 to 2,140,252
_2040
HP15_2041: HP15_2041 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,140,373 to 2,141,002
_2041
HP15_2042: HP15_2042 - crossover junction endodeoxyribonuclease RuvC, at 2,141,033 to 2,141,560
_2042
HP15_2043: HP15_2043 - protein YebC, at 2,141,579 to 2,142,322
_2043
HP15_2044: HP15_2044 - aspartyl-tRNA synthetase, at 2,142,348 to 2,144,156
_2044
Position (kb)
2141
2142 Strain fitness (log2 ratio)
-2
-1
0
1 at 2140.344 kb on + strand at 2140.344 kb on + strand at 2141.021 kb on + strand at 2141.585 kb on - strand at 2141.736 kb on - strand, within HP15_2043 at 2141.874 kb on - strand, within HP15_2043 at 2141.903 kb on + strand, within HP15_2043 at 2142.056 kb on - strand, within HP15_2043 at 2142.219 kb on + strand, within HP15_2043 at 2142.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 2,140,344 + -2.4 2,140,344 + -1.0 2,141,021 + +0.2 2,141,585 - -0.5 2,141,736 - HP15_2043 0.21 +1.1 2,141,874 - HP15_2043 0.40 +1.5 2,141,903 + HP15_2043 0.44 -0.3 2,142,056 - HP15_2043 0.64 +0.3 2,142,219 + HP15_2043 0.86 -0.0 2,142,408 - -0.5
Or see this region's nucleotide sequence