Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16810 and PGA1_c16820 are separated by 98 nucleotides PGA1_c16820 and PGA1_c16830 are separated by 50 nucleotides PGA1_c16830 and PGA1_c16840 are separated by 205 nucleotides
PGA1_c16810: PGA1_c16810 - enoyl-[acyl-carrier-protein] reductase FabI, at 1,754,040 to 1,754,858
_c16810
PGA1_c16820: PGA1_c16820 - putative threonine efflux protein, at 1,754,957 to 1,755,571
_c16820
PGA1_c16830: PGA1_c16830 - xanthine phosphoribosyltransferase Gpt, at 1,755,622 to 1,756,125
_c16830
PGA1_c16840: PGA1_c16840 - putative aspartate aminotransferase, at 1,756,331 to 1,757,521
_c16840
Position (kb)
1754
1755
1756 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1753.973 kb on + strand at 1754.884 kb on + strand at 1754.884 kb on + strand at 1754.884 kb on + strand at 1754.905 kb on - strand at 1755.002 kb on - strand at 1755.026 kb on - strand, within PGA1_c16820 at 1755.072 kb on + strand, within PGA1_c16820 at 1755.215 kb on + strand, within PGA1_c16820 at 1755.233 kb on - strand, within PGA1_c16820 at 1755.322 kb on + strand, within PGA1_c16820 at 1755.335 kb on - strand, within PGA1_c16820 at 1755.336 kb on - strand, within PGA1_c16820 at 1755.374 kb on + strand, within PGA1_c16820 at 1755.380 kb on + strand, within PGA1_c16820 at 1755.392 kb on - strand, within PGA1_c16820 at 1755.397 kb on - strand, within PGA1_c16820 at 1755.447 kb on + strand, within PGA1_c16820 at 1755.449 kb on + strand, within PGA1_c16820 at 1755.593 kb on + strand at 1755.601 kb on - strand at 1755.751 kb on + strand, within PGA1_c16830 at 1755.767 kb on + strand, within PGA1_c16830 at 1755.850 kb on + strand, within PGA1_c16830 at 1755.851 kb on + strand, within PGA1_c16830 at 1755.878 kb on - strand, within PGA1_c16830 at 1755.950 kb on + strand, within PGA1_c16830 at 1755.950 kb on + strand, within PGA1_c16830 at 1755.958 kb on - strand, within PGA1_c16830 at 1755.996 kb on + strand, within PGA1_c16830 at 1756.004 kb on - strand, within PGA1_c16830 at 1756.142 kb on - strand at 1756.226 kb on - strand at 1756.234 kb on + strand at 1756.234 kb on + strand at 1756.234 kb on + strand at 1756.236 kb on + strand at 1756.242 kb on - strand at 1756.242 kb on - strand at 1756.242 kb on - strand at 1756.247 kb on + strand at 1756.275 kb on + strand at 1756.278 kb on - strand at 1756.317 kb on + strand at 1756.317 kb on + strand at 1756.317 kb on + strand at 1756.325 kb on - strand at 1756.370 kb on - strand at 1756.371 kb on + strand at 1756.430 kb on + strand at 1756.473 kb on - strand, within PGA1_c16840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 1,753,973 + -0.2 1,754,884 + +1.2 1,754,884 + -0.8 1,754,884 + +1.0 1,754,905 - -2.3 1,755,002 - +1.1 1,755,026 - PGA1_c16820 0.11 +0.8 1,755,072 + PGA1_c16820 0.19 -0.8 1,755,215 + PGA1_c16820 0.42 +0.5 1,755,233 - PGA1_c16820 0.45 +1.3 1,755,322 + PGA1_c16820 0.59 -0.9 1,755,335 - PGA1_c16820 0.61 +0.5 1,755,336 - PGA1_c16820 0.62 -0.9 1,755,374 + PGA1_c16820 0.68 +0.4 1,755,380 + PGA1_c16820 0.69 +0.6 1,755,392 - PGA1_c16820 0.71 -0.1 1,755,397 - PGA1_c16820 0.72 +1.1 1,755,447 + PGA1_c16820 0.80 +0.6 1,755,449 + PGA1_c16820 0.80 +0.9 1,755,593 + +0.5 1,755,601 - -0.2 1,755,751 + PGA1_c16830 0.26 +0.3 1,755,767 + PGA1_c16830 0.29 -0.4 1,755,850 + PGA1_c16830 0.45 +0.7 1,755,851 + PGA1_c16830 0.45 -0.2 1,755,878 - PGA1_c16830 0.51 -0.1 1,755,950 + PGA1_c16830 0.65 +0.5 1,755,950 + PGA1_c16830 0.65 -0.4 1,755,958 - PGA1_c16830 0.67 +0.5 1,755,996 + PGA1_c16830 0.74 +0.0 1,756,004 - PGA1_c16830 0.76 +1.0 1,756,142 - -0.9 1,756,226 - +0.6 1,756,234 + +1.2 1,756,234 + -0.7 1,756,234 + -0.1 1,756,236 + -1.4 1,756,242 - -0.7 1,756,242 - -0.6 1,756,242 - +0.2 1,756,247 + -0.1 1,756,275 + -1.4 1,756,278 - +0.6 1,756,317 + -0.9 1,756,317 + +3.1 1,756,317 + -1.0 1,756,325 - +0.0 1,756,370 - -0.8 1,756,371 + -2.1 1,756,430 + +1.9 1,756,473 - PGA1_c16840 0.12 -0.7
Or see this region's nucleotide sequence