Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14850

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14840 and PGA1_c14850 are separated by 128 nucleotidesPGA1_c14850 and PGA1_c14860 overlap by 1 nucleotides PGA1_c14840: PGA1_c14840 - putative trk system potassium uptake protein TrkH, at 1,539,275 to 1,540,822 _c14840 PGA1_c14850: PGA1_c14850 - protein hfq (RNA chaperone hfq), at 1,540,951 to 1,541,190 _c14850 PGA1_c14860: PGA1_c14860 - GTP-binding protein HflX, at 1,541,190 to 1,542,461 _c14860 Position (kb) 1540 1541 1542Strain fitness (log2 ratio) -1 0 1 2at 1540.795 kb on + strandat 1540.800 kb on + strandat 1541.166 kb on + strand, within PGA1_c14850at 1541.193 kb on + strandat 1541.224 kb on - strandat 1541.364 kb on + strand, within PGA1_c14860at 1541.372 kb on + strand, within PGA1_c14860at 1541.372 kb on - strand, within PGA1_c14860at 1541.423 kb on + strand, within PGA1_c14860at 1541.431 kb on - strand, within PGA1_c14860at 1541.440 kb on - strand, within PGA1_c14860at 1541.514 kb on + strand, within PGA1_c14860at 1541.551 kb on + strand, within PGA1_c14860at 1541.559 kb on + strand, within PGA1_c14860at 1541.615 kb on + strand, within PGA1_c14860at 1541.618 kb on - strand, within PGA1_c14860at 1541.623 kb on - strand, within PGA1_c14860at 1541.679 kb on - strand, within PGA1_c14860at 1541.738 kb on + strand, within PGA1_c14860at 1541.849 kb on - strand, within PGA1_c14860at 1541.860 kb on + strand, within PGA1_c14860at 1541.868 kb on - strand, within PGA1_c14860at 1541.888 kb on - strand, within PGA1_c14860at 1542.075 kb on + strand, within PGA1_c14860at 1542.076 kb on + strand, within PGA1_c14860at 1542.101 kb on - strand, within PGA1_c14860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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1,540,795 + -0.0
1,540,800 + +0.5
1,541,166 + PGA1_c14850 0.90 -0.7
1,541,193 + +2.1
1,541,224 - -1.6
1,541,364 + PGA1_c14860 0.14 -1.5
1,541,372 + PGA1_c14860 0.14 +0.8
1,541,372 - PGA1_c14860 0.14 +0.6
1,541,423 + PGA1_c14860 0.18 -0.3
1,541,431 - PGA1_c14860 0.19 +0.3
1,541,440 - PGA1_c14860 0.20 -0.5
1,541,514 + PGA1_c14860 0.25 -0.2
1,541,551 + PGA1_c14860 0.28 -0.4
1,541,559 + PGA1_c14860 0.29 +0.9
1,541,615 + PGA1_c14860 0.33 +0.3
1,541,618 - PGA1_c14860 0.34 -0.1
1,541,623 - PGA1_c14860 0.34 +1.1
1,541,679 - PGA1_c14860 0.38 -0.1
1,541,738 + PGA1_c14860 0.43 -1.1
1,541,849 - PGA1_c14860 0.52 -1.1
1,541,860 + PGA1_c14860 0.53 -0.4
1,541,868 - PGA1_c14860 0.53 +0.5
1,541,888 - PGA1_c14860 0.55 -0.4
1,542,075 + PGA1_c14860 0.70 -1.3
1,542,076 + PGA1_c14860 0.70 -0.2
1,542,101 - PGA1_c14860 0.72 +0.4

Or see this region's nucleotide sequence