Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14800 and PGA1_c14810 overlap by 4 nucleotides PGA1_c14810 and PGA1_c14820 are separated by 69 nucleotides PGA1_c14820 and PGA1_c14830 are separated by 45 nucleotides
PGA1_c14800: PGA1_c14800 - nitrogen regulation protein NtrY, at 1,533,545 to 1,535,824
_c14800
PGA1_c14810: PGA1_c14810 - nitrogen assimilation regulatory protein NtrX, at 1,535,821 to 1,537,236
_c14810
PGA1_c14820: PGA1_c14820 - hypothetical protein, at 1,537,306 to 1,537,851
_c14820
PGA1_c14830: PGA1_c14830 - trk system potassium uptake protein TrkA, at 1,537,897 to 1,539,273
_c14830
Position (kb) 1535
1536
1537
1538 Strain fitness (log2 ratio) -1
0
1
2 at 1535.813 kb on + strand at 1535.813 kb on + strand at 1535.813 kb on + strand at 1537.224 kb on + strand at 1537.231 kb on + strand at 1537.241 kb on + strand at 1537.241 kb on + strand at 1537.275 kb on - strand at 1537.287 kb on + strand at 1537.295 kb on - strand at 1537.432 kb on + strand, within PGA1_c14820 at 1537.477 kb on - strand, within PGA1_c14820 at 1537.477 kb on - strand, within PGA1_c14820 at 1537.492 kb on + strand, within PGA1_c14820 at 1537.505 kb on - strand, within PGA1_c14820 at 1537.522 kb on + strand, within PGA1_c14820 at 1537.559 kb on - strand, within PGA1_c14820 at 1537.653 kb on + strand, within PGA1_c14820 at 1537.653 kb on + strand, within PGA1_c14820 at 1537.658 kb on + strand, within PGA1_c14820 at 1537.661 kb on - strand, within PGA1_c14820 at 1537.661 kb on - strand, within PGA1_c14820 at 1537.711 kb on + strand, within PGA1_c14820 at 1537.719 kb on - strand, within PGA1_c14820 at 1537.737 kb on + strand, within PGA1_c14820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 1,535,813 + -1.3 1,535,813 + -0.1 1,535,813 + +2.1 1,537,224 + -0.6 1,537,231 + +0.0 1,537,241 + -0.7 1,537,241 + -1.1 1,537,275 - -0.1 1,537,287 + +0.8 1,537,295 - +0.6 1,537,432 + PGA1_c14820 0.23 +1.1 1,537,477 - PGA1_c14820 0.31 +0.5 1,537,477 - PGA1_c14820 0.31 -1.3 1,537,492 + PGA1_c14820 0.34 +0.7 1,537,505 - PGA1_c14820 0.36 +0.5 1,537,522 + PGA1_c14820 0.40 +0.4 1,537,559 - PGA1_c14820 0.46 -0.5 1,537,653 + PGA1_c14820 0.64 -0.6 1,537,653 + PGA1_c14820 0.64 -1.5 1,537,658 + PGA1_c14820 0.64 +0.1 1,537,661 - PGA1_c14820 0.65 +1.4 1,537,661 - PGA1_c14820 0.65 +1.0 1,537,711 + PGA1_c14820 0.74 +0.6 1,537,719 - PGA1_c14820 0.76 +0.4 1,537,737 + PGA1_c14820 0.79 +1.5
Or see this region's nucleotide sequence