Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1054 and HP15_1055 overlap by 4 nucleotides HP15_1055 and HP15_1056 are separated by 195 nucleotides
HP15_1054: HP15_1054 - multi-sensor signal transduction histidine kinase, at 1,075,525 to 1,077,102
_1054
HP15_1055: HP15_1055 - MaoC domain protein, at 1,077,099 to 1,077,925
_1055
HP15_1056: HP15_1056 - transcriptional regulator, AraC family protein, at 1,078,121 to 1,079,290
_1056
Position (kb)
1077
1078 Strain fitness (log2 ratio)
-1
0
1
2 at 1076.204 kb on + strand, within HP15_1054 at 1076.503 kb on - strand, within HP15_1054 at 1077.043 kb on + strand at 1077.105 kb on - strand at 1077.152 kb on + strand at 1077.165 kb on - strand at 1077.364 kb on - strand, within HP15_1055 at 1077.371 kb on - strand, within HP15_1055 at 1077.661 kb on + strand, within HP15_1055 at 1077.713 kb on - strand, within HP15_1055 at 1077.795 kb on + strand, within HP15_1055 at 1077.821 kb on - strand, within HP15_1055 at 1077.984 kb on - strand at 1078.085 kb on - strand at 1078.087 kb on + strand at 1078.153 kb on + strand at 1078.153 kb on + strand at 1078.153 kb on + strand at 1078.161 kb on - strand at 1078.161 kb on - strand at 1078.404 kb on + strand, within HP15_1056 at 1078.417 kb on - strand, within HP15_1056 at 1078.527 kb on + strand, within HP15_1056 at 1078.527 kb on + strand, within HP15_1056 at 1078.626 kb on + strand, within HP15_1056 at 1078.639 kb on - strand, within HP15_1056 at 1078.683 kb on + strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 1,076,204 + HP15_1054 0.43 +0.3 1,076,503 - HP15_1054 0.62 -0.1 1,077,043 + +0.1 1,077,105 - +0.2 1,077,152 + -0.4 1,077,165 - -0.4 1,077,364 - HP15_1055 0.32 -0.3 1,077,371 - HP15_1055 0.33 -1.0 1,077,661 + HP15_1055 0.68 -1.7 1,077,713 - HP15_1055 0.74 -1.0 1,077,795 + HP15_1055 0.84 +0.1 1,077,821 - HP15_1055 0.87 -1.1 1,077,984 - +0.9 1,078,085 - +2.2 1,078,087 + +0.7 1,078,153 + -0.9 1,078,153 + -0.1 1,078,153 + -0.1 1,078,161 - -0.2 1,078,161 - -0.1 1,078,404 + HP15_1056 0.24 -1.1 1,078,417 - HP15_1056 0.25 +0.3 1,078,527 + HP15_1056 0.35 +0.5 1,078,527 + HP15_1056 0.35 -0.1 1,078,626 + HP15_1056 0.43 -0.2 1,078,639 - HP15_1056 0.44 -0.3 1,078,683 + HP15_1056 0.48 +1.2 1,078,804 - HP15_1056 0.58 -0.6 1,078,804 - HP15_1056 0.58 -0.4 1,078,804 - HP15_1056 0.58 +2.2 1,078,804 - HP15_1056 0.58 +0.3
Or see this region's nucleotide sequence