Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3424 and Dsui_3425 are separated by 82 nucleotides Dsui_3425 and Dsui_3426 are separated by 189 nucleotides Dsui_3426 and Dsui_3427 are separated by 138 nucleotides Dsui_3427 and Dsui_3428 are separated by 118 nucleotides
Dsui_3424: Dsui_3424 - ATP:cob(I)alamin adenosyltransferase, at 3,675,774 to 3,676,352
_3424
Dsui_3425: Dsui_3425 - putative translation initiation inhibitor, yjgF family, at 3,676,435 to 3,676,833
_3425
Dsui_3426: Dsui_3426 - transcriptional regulator, at 3,677,023 to 3,677,925
_3426
Dsui_3427: Dsui_3427 - nicotinamidase-like amidase, at 3,678,064 to 3,678,588
_3427
Dsui_3428: Dsui_3428 - transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,678,707 to 3,679,666
_3428
Position (kb)
3677
3678 Strain fitness (log2 ratio)
-2
-1
0
1 at 3676.039 kb on + strand, within Dsui_3424 at 3676.042 kb on - strand at 3676.259 kb on + strand, within Dsui_3424 at 3676.313 kb on + strand at 3676.489 kb on - strand at 3676.497 kb on + strand, within Dsui_3425 at 3676.538 kb on - strand, within Dsui_3425 at 3676.561 kb on + strand at 3676.621 kb on + strand, within Dsui_3425 at 3676.646 kb on + strand at 3676.654 kb on - strand at 3676.778 kb on + strand, within Dsui_3425 at 3676.788 kb on + strand at 3676.788 kb on - strand at 3676.796 kb on - strand at 3676.895 kb on + strand at 3676.904 kb on + strand at 3676.921 kb on - strand at 3676.930 kb on + strand at 3677.093 kb on - strand at 3677.290 kb on - strand, within Dsui_3426 at 3677.353 kb on + strand, within Dsui_3426 at 3677.457 kb on - strand, within Dsui_3426 at 3677.467 kb on - strand, within Dsui_3426 at 3677.532 kb on - strand at 3677.532 kb on - strand at 3677.587 kb on - strand, within Dsui_3426 at 3677.604 kb on + strand, within Dsui_3426 at 3677.772 kb on - strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.062 kb on + strand at 3678.149 kb on + strand, within Dsui_3427 at 3678.191 kb on + strand at 3678.196 kb on + strand at 3678.199 kb on - strand at 3678.251 kb on - strand at 3678.286 kb on - strand at 3678.302 kb on - strand at 3678.302 kb on - strand, within Dsui_3427 at 3678.460 kb on - strand at 3678.500 kb on + strand at 3678.557 kb on + strand at 3678.836 kb on - strand at 3678.876 kb on + strand, within Dsui_3428
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,676,039 + Dsui_3424 0.46 -1.8 3,676,042 - -0.4 3,676,259 + Dsui_3424 0.84 -2.1 3,676,313 + -1.2 3,676,489 - -0.4 3,676,497 + Dsui_3425 0.16 -0.4 3,676,538 - Dsui_3425 0.26 -1.0 3,676,561 + +0.6 3,676,621 + Dsui_3425 0.47 -0.4 3,676,646 + -0.4 3,676,654 - +0.6 3,676,778 + Dsui_3425 0.86 -2.0 3,676,788 + -0.4 3,676,788 - +0.6 3,676,796 - +0.6 3,676,895 + +0.6 3,676,904 + +0.6 3,676,921 - -1.0 3,676,930 + -1.0 3,677,093 - -0.4 3,677,290 - Dsui_3426 0.30 -1.4 3,677,353 + Dsui_3426 0.37 +0.6 3,677,457 - Dsui_3426 0.48 -1.4 3,677,467 - Dsui_3426 0.49 -1.7 3,677,532 - +0.6 3,677,532 - -0.4 3,677,587 - Dsui_3426 0.62 +0.6 3,677,604 + Dsui_3426 0.64 -2.7 3,677,772 - -0.4 3,678,062 + +0.6 3,678,062 + +0.6 3,678,062 + -2.0 3,678,062 + -1.0 3,678,062 + -0.4 3,678,062 + -2.0 3,678,062 + +0.6 3,678,062 + +0.6 3,678,062 + +0.6 3,678,149 + Dsui_3427 0.16 -1.0 3,678,191 + +0.6 3,678,196 + +0.6 3,678,199 - +0.6 3,678,251 - -0.4 3,678,286 - -0.4 3,678,302 - +0.6 3,678,302 - Dsui_3427 0.45 +0.6 3,678,460 - +0.6 3,678,500 + -1.0 3,678,557 + +0.6 3,678,836 - +0.6 3,678,876 + Dsui_3428 0.18 +0.2
Or see this region's nucleotide sequence