Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3290 and Dsui_3291 overlap by 4 nucleotides Dsui_3291 and Dsui_3292 are separated by 93 nucleotides Dsui_3292 and Dsui_3293 overlap by 62 nucleotides Dsui_3293 and Dsui_3294 are separated by 1 nucleotides
Dsui_3290: Dsui_3290 - 4-hydroxybenzoate synthetase (chorismate lyase), at 3,531,626 to 3,532,171
_3290
Dsui_3291: Dsui_3291 - hypothetical protein, at 3,532,168 to 3,532,626
_3291
Dsui_3292: Dsui_3292 - hypothetical protein, at 3,532,720 to 3,532,878
_3292
Dsui_3293: Dsui_3293 - pseudouridine synthase family protein, at 3,532,817 to 3,533,482
_3293
Dsui_3294: Dsui_3294 - isocitrate dehydrogenase kinase/phosphatase, at 3,533,484 to 3,535,331
_3294
Position (kb)
3532
3533
3534 Strain fitness (log2 ratio)
-2
-1
0
1 at 3531.898 kb on - strand, within Dsui_3290 at 3531.959 kb on - strand, within Dsui_3290 at 3531.984 kb on - strand, within Dsui_3290 at 3531.991 kb on + strand, within Dsui_3290 at 3532.195 kb on - strand at 3532.203 kb on + strand at 3532.203 kb on + strand at 3532.306 kb on - strand, within Dsui_3291 at 3532.484 kb on + strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.527 kb on + strand at 3532.672 kb on - strand at 3532.674 kb on + strand at 3532.682 kb on - strand at 3532.848 kb on + strand at 3532.848 kb on + strand at 3532.856 kb on - strand at 3532.856 kb on - strand at 3533.028 kb on - strand, within Dsui_3293 at 3533.033 kb on - strand, within Dsui_3293 at 3533.128 kb on - strand, within Dsui_3293 at 3533.169 kb on - strand at 3533.174 kb on - strand, within Dsui_3293 at 3533.179 kb on - strand, within Dsui_3293 at 3533.250 kb on + strand, within Dsui_3293 at 3533.250 kb on + strand, within Dsui_3293 at 3533.258 kb on - strand, within Dsui_3293 at 3533.299 kb on - strand, within Dsui_3293 at 3533.349 kb on - strand, within Dsui_3293 at 3533.378 kb on - strand, within Dsui_3293 at 3533.389 kb on + strand at 3533.389 kb on + strand at 3533.448 kb on + strand at 3533.531 kb on + strand at 3533.539 kb on - strand at 3533.620 kb on - strand at 3533.642 kb on - strand at 3533.743 kb on - strand, within Dsui_3294 at 3533.758 kb on - strand, within Dsui_3294 at 3533.860 kb on - strand, within Dsui_3294 at 3533.964 kb on - strand, within Dsui_3294 at 3533.976 kb on - strand, within Dsui_3294 at 3533.976 kb on - strand, within Dsui_3294 at 3533.976 kb on - strand, within Dsui_3294 at 3533.983 kb on + strand, within Dsui_3294 at 3533.983 kb on + strand at 3533.983 kb on + strand at 3534.005 kb on + strand at 3534.040 kb on - strand, within Dsui_3294 at 3534.070 kb on - strand, within Dsui_3294 at 3534.070 kb on - strand, within Dsui_3294 at 3534.084 kb on + strand at 3534.092 kb on - strand, within Dsui_3294 at 3534.092 kb on - strand, within Dsui_3294 at 3534.112 kb on - strand, within Dsui_3294 at 3534.132 kb on - strand, within Dsui_3294 at 3534.135 kb on + strand at 3534.141 kb on - strand, within Dsui_3294 at 3534.162 kb on + strand at 3534.183 kb on - strand, within Dsui_3294 at 3534.187 kb on + strand, within Dsui_3294 at 3534.188 kb on - strand, within Dsui_3294 at 3534.188 kb on - strand, within Dsui_3294 at 3534.247 kb on + strand, within Dsui_3294 at 3534.248 kb on - strand, within Dsui_3294 at 3534.255 kb on - strand, within Dsui_3294 at 3534.324 kb on - strand, within Dsui_3294 at 3534.343 kb on + strand, within Dsui_3294 at 3534.351 kb on - strand, within Dsui_3294 at 3534.369 kb on - strand, within Dsui_3294 at 3534.381 kb on - strand, within Dsui_3294 at 3534.385 kb on + strand at 3534.468 kb on + strand, within Dsui_3294 at 3534.476 kb on - strand, within Dsui_3294
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,531,898 - Dsui_3290 0.50 +0.1 3,531,959 - Dsui_3290 0.61 -0.8 3,531,984 - Dsui_3290 0.66 +0.7 3,531,991 + Dsui_3290 0.67 -2.0 3,532,195 - +0.1 3,532,203 + +0.6 3,532,203 + -1.0 3,532,306 - Dsui_3291 0.30 +0.1 3,532,484 + Dsui_3291 0.69 +0.6 3,532,492 - Dsui_3291 0.71 +0.4 3,532,492 - Dsui_3291 0.71 +0.0 3,532,527 + +0.6 3,532,672 - +0.5 3,532,674 + +0.6 3,532,682 - +0.1 3,532,848 + +0.6 3,532,848 + +0.6 3,532,856 - +0.2 3,532,856 - +0.3 3,533,028 - Dsui_3293 0.32 +0.4 3,533,033 - Dsui_3293 0.32 +0.0 3,533,128 - Dsui_3293 0.47 +0.6 3,533,169 - +0.6 3,533,174 - Dsui_3293 0.54 +0.6 3,533,179 - Dsui_3293 0.54 -0.7 3,533,250 + Dsui_3293 0.65 -2.2 3,533,250 + Dsui_3293 0.65 +0.5 3,533,258 - Dsui_3293 0.66 -1.0 3,533,299 - Dsui_3293 0.72 +0.6 3,533,349 - Dsui_3293 0.80 +0.6 3,533,378 - Dsui_3293 0.84 +0.6 3,533,389 + -0.4 3,533,389 + +0.6 3,533,448 + +0.6 3,533,531 + +0.6 3,533,539 - -1.7 3,533,620 - -0.4 3,533,642 - +0.6 3,533,743 - Dsui_3294 0.14 +0.6 3,533,758 - Dsui_3294 0.15 -1.0 3,533,860 - Dsui_3294 0.20 -0.4 3,533,964 - Dsui_3294 0.26 -0.4 3,533,976 - Dsui_3294 0.27 -0.4 3,533,976 - Dsui_3294 0.27 -1.0 3,533,976 - Dsui_3294 0.27 +0.6 3,533,983 + Dsui_3294 0.27 +0.6 3,533,983 + +0.6 3,533,983 + +0.6 3,534,005 + -0.4 3,534,040 - Dsui_3294 0.30 +0.6 3,534,070 - Dsui_3294 0.32 -0.4 3,534,070 - Dsui_3294 0.32 +0.6 3,534,084 + +0.6 3,534,092 - Dsui_3294 0.33 -1.0 3,534,092 - Dsui_3294 0.33 -2.2 3,534,112 - Dsui_3294 0.34 +0.6 3,534,132 - Dsui_3294 0.35 -1.7 3,534,135 + +0.6 3,534,141 - Dsui_3294 0.36 -1.4 3,534,162 + -1.0 3,534,183 - Dsui_3294 0.38 -0.4 3,534,187 + Dsui_3294 0.38 -1.7 3,534,188 - Dsui_3294 0.38 -2.2 3,534,188 - Dsui_3294 0.38 -1.0 3,534,247 + Dsui_3294 0.41 +0.6 3,534,248 - Dsui_3294 0.41 -2.7 3,534,255 - Dsui_3294 0.42 -1.0 3,534,324 - Dsui_3294 0.45 -1.4 3,534,343 + Dsui_3294 0.46 -1.4 3,534,351 - Dsui_3294 0.47 +0.6 3,534,369 - Dsui_3294 0.48 -0.4 3,534,381 - Dsui_3294 0.49 -1.0 3,534,385 + +0.6 3,534,468 + Dsui_3294 0.53 -1.4 3,534,476 - Dsui_3294 0.54 +0.6
Or see this region's nucleotide sequence