Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3198 and Dsui_3199 are separated by 142 nucleotides Dsui_3199 and Dsui_3200 overlap by 1 nucleotides Dsui_3200 and Dsui_3201 are separated by 20 nucleotides Dsui_3201 and Dsui_3202 are separated by 92 nucleotides Dsui_3202 and Dsui_3203 are separated by 30 nucleotides
Dsui_3198: Dsui_3198 - 3-isopropylmalate dehydrogenase, at 3,434,260 to 3,435,324
_3198
Dsui_3199: Dsui_3199 - 3-isopropylmalate dehydratase, small subunit, at 3,435,467 to 3,436,105
_3199
Dsui_3200: Dsui_3200 - putative small secreted protein, at 3,436,105 to 3,436,227
_3200
Dsui_3201: Dsui_3201 - 3-isopropylmalate dehydratase, large subunit, at 3,436,248 to 3,437,654
_3201
Dsui_3202: Dsui_3202 - Peptidase family M48, at 3,437,747 to 3,438,619
_3202
Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816
_3203
Position (kb)
3436
3437
3438 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3435.349 kb on - strand at 3435.373 kb on + strand at 3435.381 kb on - strand at 3436.237 kb on - strand at 3437.730 kb on - strand at 3437.838 kb on + strand at 3437.871 kb on - strand, within Dsui_3202 at 3437.980 kb on - strand, within Dsui_3202 at 3437.998 kb on - strand, within Dsui_3202 at 3438.004 kb on - strand, within Dsui_3202 at 3438.041 kb on - strand, within Dsui_3202 at 3438.093 kb on - strand, within Dsui_3202 at 3438.098 kb on - strand, within Dsui_3202 at 3438.129 kb on - strand, within Dsui_3202 at 3438.252 kb on - strand, within Dsui_3202 at 3438.308 kb on - strand, within Dsui_3202 at 3438.356 kb on - strand, within Dsui_3202 at 3438.369 kb on - strand, within Dsui_3202 at 3438.499 kb on - strand, within Dsui_3202
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,435,349 - -0.5 3,435,373 + -0.5 3,435,381 - +0.4 3,436,237 - -0.4 3,437,730 - +0.5 3,437,838 + +0.5 3,437,871 - Dsui_3202 0.14 -0.5 3,437,980 - Dsui_3202 0.27 +0.5 3,437,998 - Dsui_3202 0.29 +0.1 3,438,004 - Dsui_3202 0.29 -0.1 3,438,041 - Dsui_3202 0.34 -1.5 3,438,093 - Dsui_3202 0.40 -1.8 3,438,098 - Dsui_3202 0.40 +2.1 3,438,129 - Dsui_3202 0.44 -2.1 3,438,252 - Dsui_3202 0.58 +0.5 3,438,308 - Dsui_3202 0.64 -0.2 3,438,356 - Dsui_3202 0.70 +0.5 3,438,369 - Dsui_3202 0.71 -1.5 3,438,499 - Dsui_3202 0.86 +1.5
Or see this region's nucleotide sequence