Strain Fitness in Dechlorosoma suillum PS around Dsui_3201

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3198 and Dsui_3199 are separated by 142 nucleotidesDsui_3199 and Dsui_3200 overlap by 1 nucleotidesDsui_3200 and Dsui_3201 are separated by 20 nucleotidesDsui_3201 and Dsui_3202 are separated by 92 nucleotidesDsui_3202 and Dsui_3203 are separated by 30 nucleotides Dsui_3198: Dsui_3198 - 3-isopropylmalate dehydrogenase, at 3,434,260 to 3,435,324 _3198 Dsui_3199: Dsui_3199 - 3-isopropylmalate dehydratase, small subunit, at 3,435,467 to 3,436,105 _3199 Dsui_3200: Dsui_3200 - putative small secreted protein, at 3,436,105 to 3,436,227 _3200 Dsui_3201: Dsui_3201 - 3-isopropylmalate dehydratase, large subunit, at 3,436,248 to 3,437,654 _3201 Dsui_3202: Dsui_3202 - Peptidase family M48, at 3,437,747 to 3,438,619 _3202 Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816 _3203 Position (kb) 3436 3437 3438Strain fitness (log2 ratio) -2 -1 0 1 2at 3435.349 kb on - strandat 3435.373 kb on + strandat 3435.381 kb on - strandat 3436.237 kb on - strandat 3437.730 kb on - strandat 3437.838 kb on + strandat 3437.871 kb on - strand, within Dsui_3202at 3437.980 kb on - strand, within Dsui_3202at 3437.998 kb on - strand, within Dsui_3202at 3438.004 kb on - strand, within Dsui_3202at 3438.041 kb on - strand, within Dsui_3202at 3438.093 kb on - strand, within Dsui_3202at 3438.098 kb on - strand, within Dsui_3202at 3438.129 kb on - strand, within Dsui_3202at 3438.252 kb on - strand, within Dsui_3202at 3438.308 kb on - strand, within Dsui_3202at 3438.356 kb on - strand, within Dsui_3202at 3438.369 kb on - strand, within Dsui_3202at 3438.499 kb on - strand, within Dsui_3202

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,435,349 - -0.5
3,435,373 + -0.5
3,435,381 - +0.4
3,436,237 - -0.4
3,437,730 - +0.5
3,437,838 + +0.5
3,437,871 - Dsui_3202 0.14 -0.5
3,437,980 - Dsui_3202 0.27 +0.5
3,437,998 - Dsui_3202 0.29 +0.1
3,438,004 - Dsui_3202 0.29 -0.1
3,438,041 - Dsui_3202 0.34 -1.5
3,438,093 - Dsui_3202 0.40 -1.8
3,438,098 - Dsui_3202 0.40 +2.1
3,438,129 - Dsui_3202 0.44 -2.1
3,438,252 - Dsui_3202 0.58 +0.5
3,438,308 - Dsui_3202 0.64 -0.2
3,438,356 - Dsui_3202 0.70 +0.5
3,438,369 - Dsui_3202 0.71 -1.5
3,438,499 - Dsui_3202 0.86 +1.5

Or see this region's nucleotide sequence