Strain Fitness in Dechlorosoma suillum PS around Dsui_2960

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2958 and Dsui_2959 are separated by 13 nucleotidesDsui_2959 and Dsui_2960 are separated by 9 nucleotidesDsui_2960 and Dsui_2961 are separated by 3 nucleotidesDsui_2961 and Dsui_2962 overlap by 11 nucleotides Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240 _2958 Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057 _2959 Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053 _2960 Dsui_2961: Dsui_2961 - precorrin isomerase, at 3,169,057 to 3,169,737 _2961 Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923 _2962 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -3 -2 -1 0 1at 3167.074 kb on + strand, within Dsui_2958at 3167.197 kb on + strandat 3167.385 kb on - strand, within Dsui_2959at 3167.503 kb on + strand, within Dsui_2959at 3167.580 kb on - strandat 3167.726 kb on + strand, within Dsui_2959at 3167.741 kb on + strand, within Dsui_2959at 3167.749 kb on - strandat 3167.841 kb on + strand, within Dsui_2959at 3167.934 kb on + strand, within Dsui_2959at 3167.942 kb on - strand, within Dsui_2959at 3168.011 kb on + strandat 3168.051 kb on - strandat 3168.100 kb on - strandat 3168.321 kb on + strand, within Dsui_2960at 3168.321 kb on + strand, within Dsui_2960at 3168.329 kb on - strand, within Dsui_2960at 3168.455 kb on + strand, within Dsui_2960at 3168.458 kb on - strand, within Dsui_2960at 3168.585 kb on - strand, within Dsui_2960at 3168.642 kb on + strand, within Dsui_2960at 3168.788 kb on + strand, within Dsui_2960at 3169.054 kb on + strandat 3169.089 kb on + strandat 3169.097 kb on - strandat 3169.198 kb on + strand, within Dsui_2961at 3169.278 kb on + strand, within Dsui_2961at 3169.286 kb on - strand, within Dsui_2961at 3169.404 kb on + strand, within Dsui_2961at 3169.560 kb on + strandat 3169.640 kb on - strandat 3169.703 kb on + strandat 3169.716 kb on - strandat 3169.754 kb on + strandat 3169.754 kb on + strandat 3169.886 kb on - strand, within Dsui_2962at 3169.886 kb on - strand, within Dsui_2962at 3169.943 kb on - strand, within Dsui_2962

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,167,074 + Dsui_2958 0.80 -0.7
3,167,197 + +0.1
3,167,385 - Dsui_2959 0.16 -0.9
3,167,503 + Dsui_2959 0.31 -1.4
3,167,580 - -0.4
3,167,726 + Dsui_2959 0.59 -0.4
3,167,741 + Dsui_2959 0.61 -1.2
3,167,749 - +0.6
3,167,841 + Dsui_2959 0.73 -1.9
3,167,934 + Dsui_2959 0.85 -1.9
3,167,942 - Dsui_2959 0.86 -0.9
3,168,011 + -3.2
3,168,051 - -0.4
3,168,100 - +0.6
3,168,321 + Dsui_2960 0.26 -1.4
3,168,321 + Dsui_2960 0.26 +0.6
3,168,329 - Dsui_2960 0.27 -1.9
3,168,455 + Dsui_2960 0.39 -2.5
3,168,458 - Dsui_2960 0.40 -1.4
3,168,585 - Dsui_2960 0.52 -1.9
3,168,642 + Dsui_2960 0.58 -0.9
3,168,788 + Dsui_2960 0.73 -1.8
3,169,054 + -0.4
3,169,089 + -0.2
3,169,097 - -0.4
3,169,198 + Dsui_2961 0.21 -0.7
3,169,278 + Dsui_2961 0.32 -1.6
3,169,286 - Dsui_2961 0.34 -0.9
3,169,404 + Dsui_2961 0.51 +0.1
3,169,560 + -0.7
3,169,640 - +0.6
3,169,703 + -1.7
3,169,716 - +0.6
3,169,754 + -0.9
3,169,754 + -0.9
3,169,886 - Dsui_2962 0.13 -1.7
3,169,886 - Dsui_2962 0.13 -0.9
3,169,943 - Dsui_2962 0.18 -0.4

Or see this region's nucleotide sequence