Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2958 and Dsui_2959 are separated by 13 nucleotides Dsui_2959 and Dsui_2960 are separated by 9 nucleotides Dsui_2960 and Dsui_2961 are separated by 3 nucleotides Dsui_2961 and Dsui_2962 overlap by 11 nucleotides
Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240
_2958
Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057
_2959
Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053
_2960
Dsui_2961: Dsui_2961 - precorrin isomerase, at 3,169,057 to 3,169,737
_2961
Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923
_2962
Position (kb)
3168
3169
3170 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3167.074 kb on + strand, within Dsui_2958 at 3167.197 kb on + strand at 3167.385 kb on - strand, within Dsui_2959 at 3167.503 kb on + strand, within Dsui_2959 at 3167.580 kb on - strand at 3167.726 kb on + strand, within Dsui_2959 at 3167.741 kb on + strand, within Dsui_2959 at 3167.749 kb on - strand at 3167.841 kb on + strand, within Dsui_2959 at 3167.934 kb on + strand, within Dsui_2959 at 3167.942 kb on - strand, within Dsui_2959 at 3168.011 kb on + strand at 3168.051 kb on - strand at 3168.100 kb on - strand at 3168.321 kb on + strand, within Dsui_2960 at 3168.321 kb on + strand, within Dsui_2960 at 3168.329 kb on - strand, within Dsui_2960 at 3168.455 kb on + strand, within Dsui_2960 at 3168.458 kb on - strand, within Dsui_2960 at 3168.585 kb on - strand, within Dsui_2960 at 3168.642 kb on + strand, within Dsui_2960 at 3168.788 kb on + strand, within Dsui_2960 at 3169.054 kb on + strand at 3169.089 kb on + strand at 3169.097 kb on - strand at 3169.198 kb on + strand, within Dsui_2961 at 3169.278 kb on + strand, within Dsui_2961 at 3169.286 kb on - strand, within Dsui_2961 at 3169.404 kb on + strand, within Dsui_2961 at 3169.560 kb on + strand at 3169.640 kb on - strand at 3169.703 kb on + strand at 3169.716 kb on - strand at 3169.754 kb on + strand at 3169.754 kb on + strand at 3169.886 kb on - strand, within Dsui_2962 at 3169.886 kb on - strand, within Dsui_2962 at 3169.943 kb on - strand, within Dsui_2962
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,167,074 + Dsui_2958 0.80 -0.7 3,167,197 + +0.1 3,167,385 - Dsui_2959 0.16 -0.9 3,167,503 + Dsui_2959 0.31 -1.4 3,167,580 - -0.4 3,167,726 + Dsui_2959 0.59 -0.4 3,167,741 + Dsui_2959 0.61 -1.2 3,167,749 - +0.6 3,167,841 + Dsui_2959 0.73 -1.9 3,167,934 + Dsui_2959 0.85 -1.9 3,167,942 - Dsui_2959 0.86 -0.9 3,168,011 + -3.2 3,168,051 - -0.4 3,168,100 - +0.6 3,168,321 + Dsui_2960 0.26 -1.4 3,168,321 + Dsui_2960 0.26 +0.6 3,168,329 - Dsui_2960 0.27 -1.9 3,168,455 + Dsui_2960 0.39 -2.5 3,168,458 - Dsui_2960 0.40 -1.4 3,168,585 - Dsui_2960 0.52 -1.9 3,168,642 + Dsui_2960 0.58 -0.9 3,168,788 + Dsui_2960 0.73 -1.8 3,169,054 + -0.4 3,169,089 + -0.2 3,169,097 - -0.4 3,169,198 + Dsui_2961 0.21 -0.7 3,169,278 + Dsui_2961 0.32 -1.6 3,169,286 - Dsui_2961 0.34 -0.9 3,169,404 + Dsui_2961 0.51 +0.1 3,169,560 + -0.7 3,169,640 - +0.6 3,169,703 + -1.7 3,169,716 - +0.6 3,169,754 + -0.9 3,169,754 + -0.9 3,169,886 - Dsui_2962 0.13 -1.7 3,169,886 - Dsui_2962 0.13 -0.9 3,169,943 - Dsui_2962 0.18 -0.4
Or see this region's nucleotide sequence