Strain Fitness in Dechlorosoma suillum PS around Dsui_2884

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2882 and Dsui_2883 overlap by 1 nucleotidesDsui_2883 and Dsui_2884 are separated by 166 nucleotidesDsui_2884 and Dsui_2885 are separated by 189 nucleotides Dsui_2882: Dsui_2882 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,078,263 to 3,079,015 _2882 Dsui_2883: Dsui_2883 - biotin biosynthesis protein BioC, at 3,079,015 to 3,079,788 _2883 Dsui_2884: Dsui_2884 - dethiobiotin synthase, at 3,079,955 to 3,080,608 _2884 Dsui_2885: Dsui_2885 - PAS domain S-box, at 3,080,798 to 3,083,941 _2885 Position (kb) 3079 3080 3081Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3078.983 kb on + strandat 3079.040 kb on + strandat 3079.069 kb on - strandat 3079.100 kb on - strand, within Dsui_2883at 3079.224 kb on + strandat 3079.341 kb on + strand, within Dsui_2883at 3079.354 kb on - strandat 3079.375 kb on - strand, within Dsui_2883at 3079.439 kb on + strand, within Dsui_2883at 3079.548 kb on - strandat 3079.601 kb on + strand, within Dsui_2883at 3079.754 kb on - strandat 3079.770 kb on + strandat 3079.778 kb on - strandat 3079.928 kb on - strandat 3079.953 kb on + strandat 3079.961 kb on - strandat 3079.963 kb on + strandat 3080.005 kb on - strandat 3080.046 kb on - strand, within Dsui_2884at 3080.148 kb on + strand, within Dsui_2884at 3080.155 kb on - strand, within Dsui_2884at 3080.163 kb on + strand, within Dsui_2884at 3080.355 kb on - strandat 3080.416 kb on + strand, within Dsui_2884at 3080.602 kb on + strandat 3080.872 kb on + strandat 3080.938 kb on + strandat 3081.282 kb on - strand, within Dsui_2885at 3081.310 kb on + strand, within Dsui_2885at 3081.389 kb on + strandat 3081.421 kb on + strandat 3081.497 kb on + strand, within Dsui_2885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
3,078,983 + -4.0
3,079,040 + -5.2
3,079,069 - -0.9
3,079,100 - Dsui_2883 0.11 +0.6
3,079,224 + -1.4
3,079,341 + Dsui_2883 0.42 -4.9
3,079,354 - -0.4
3,079,375 - Dsui_2883 0.47 +0.6
3,079,439 + Dsui_2883 0.55 -4.1
3,079,548 - +0.6
3,079,601 + Dsui_2883 0.76 -3.9
3,079,754 - -0.9
3,079,770 + -1.5
3,079,778 - +0.6
3,079,928 - +0.6
3,079,953 + -3.1
3,079,961 - +0.6
3,079,963 + -3.4
3,080,005 - +0.6
3,080,046 - Dsui_2884 0.14 -1.4
3,080,148 + Dsui_2884 0.30 -5.3
3,080,155 - Dsui_2884 0.31 -0.9
3,080,163 + Dsui_2884 0.32 -3.9
3,080,355 - -0.9
3,080,416 + Dsui_2884 0.70 -4.0
3,080,602 + -0.2
3,080,872 + -0.4
3,080,938 + +0.6
3,081,282 - Dsui_2885 0.15 -0.4
3,081,310 + Dsui_2885 0.16 +0.6
3,081,389 + +0.6
3,081,421 + +0.6
3,081,497 + Dsui_2885 0.22 -0.4

Or see this region's nucleotide sequence