Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2808 and Dsui_2809 are separated by 59 nucleotides Dsui_2809 and Dsui_2810 overlap by 4 nucleotides Dsui_2810 and Dsui_2811 are separated by 19 nucleotides
Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211
_2808
Dsui_2809: Dsui_2809 - ABC-type uncharacterized transport system, auxiliary component, at 2,983,271 to 2,983,858
_2809
Dsui_2810: Dsui_2810 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 2,983,855 to 2,984,778
_2810
Dsui_2811: Dsui_2811 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 2,984,798 to 2,985,571
_2811
Position (kb)
2983
2984 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2982.343 kb on + strand, within Dsui_2808 at 2982.507 kb on + strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.564 kb on - strand, within Dsui_2808 at 2982.700 kb on + strand at 2982.826 kb on - strand, within Dsui_2808 at 2983.054 kb on + strand at 2983.122 kb on + strand at 2983.741 kb on - strand, within Dsui_2809 at 2983.827 kb on - strand at 2983.861 kb on - strand at 2984.498 kb on - strand, within Dsui_2810 at 2984.511 kb on + strand at 2984.718 kb on - strand at 2984.734 kb on - strand at 2984.737 kb on + strand at 2984.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,982,343 + Dsui_2808 0.48 +0.7 2,982,507 + Dsui_2808 0.58 +0.7 2,982,510 - Dsui_2808 0.58 +0.5 2,982,510 - Dsui_2808 0.58 -0.1 2,982,510 - Dsui_2808 0.58 +0.7 2,982,564 - Dsui_2808 0.61 +0.6 2,982,700 + +0.7 2,982,826 - Dsui_2808 0.77 -2.9 2,983,054 + +0.7 2,983,122 + +0.7 2,983,741 - Dsui_2809 0.80 -0.0 2,983,827 - -0.3 2,983,861 - -1.3 2,984,498 - Dsui_2810 0.70 +0.7 2,984,511 + +0.7 2,984,718 - +0.7 2,984,734 - -1.3 2,984,737 + +0.7 2,984,803 - +0.7
Or see this region's nucleotide sequence