Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2804 and Dsui_2805 are separated by 40 nucleotides Dsui_2805 and Dsui_2806 are separated by 53 nucleotides Dsui_2806 and Dsui_2807 are separated by 130 nucleotides Dsui_2807 and Dsui_2808 are separated by 71 nucleotides
Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557
_2804
Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467
_2805
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Dsui_2807: Dsui_2807 - enoyl-CoA hydratase/carnithine racemase, at 2,980,693 to 2,981,481
_2807
Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211
_2808
Position (kb)
2977
2978
2979
2980
2981 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2976.537 kb on - strand at 2976.539 kb on + strand at 2976.539 kb on + strand at 2976.819 kb on - strand, within Dsui_2805 at 2976.963 kb on - strand, within Dsui_2805 at 2977.097 kb on - strand, within Dsui_2805 at 2977.433 kb on + strand at 2977.433 kb on + strand at 2977.441 kb on - strand at 2977.441 kb on - strand at 2977.451 kb on - strand at 2977.487 kb on + strand at 2977.490 kb on - strand at 2977.518 kb on - strand at 2977.567 kb on - strand at 2977.615 kb on - strand at 2977.667 kb on + strand at 2977.687 kb on - strand at 2977.736 kb on + strand at 2977.867 kb on - strand, within Dsui_2806 at 2978.097 kb on - strand, within Dsui_2806 at 2978.228 kb on + strand at 2978.234 kb on - strand, within Dsui_2806 at 2978.281 kb on - strand at 2978.560 kb on - strand, within Dsui_2806 at 2978.647 kb on - strand, within Dsui_2806 at 2978.762 kb on - strand, within Dsui_2806 at 2978.764 kb on + strand at 2979.126 kb on + strand at 2979.150 kb on - strand, within Dsui_2806 at 2979.171 kb on - strand, within Dsui_2806 at 2979.261 kb on - strand, within Dsui_2806 at 2979.364 kb on - strand, within Dsui_2806 at 2979.421 kb on + strand at 2979.433 kb on - strand at 2979.455 kb on - strand at 2979.715 kb on - strand, within Dsui_2806 at 2979.753 kb on - strand, within Dsui_2806 at 2979.803 kb on + strand at 2979.811 kb on - strand, within Dsui_2806 at 2979.932 kb on - strand, within Dsui_2806 at 2979.932 kb on - strand, within Dsui_2806 at 2979.952 kb on - strand, within Dsui_2806 at 2980.088 kb on + strand at 2980.121 kb on - strand, within Dsui_2806 at 2980.379 kb on + strand at 2980.553 kb on - strand at 2980.782 kb on - strand, within Dsui_2807 at 2980.953 kb on - strand, within Dsui_2807 at 2980.967 kb on + strand, within Dsui_2807 at 2981.048 kb on + strand at 2981.056 kb on - strand, within Dsui_2807 at 2981.181 kb on - strand, within Dsui_2807 at 2981.227 kb on - strand, within Dsui_2807 at 2981.274 kb on + strand, within Dsui_2807 at 2981.384 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.465 kb on + strand at 2981.468 kb on - strand at 2981.517 kb on - strand at 2981.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,976,537 - +0.1 2,976,539 + -0.9 2,976,539 + -1.6 2,976,819 - Dsui_2805 0.25 +0.7 2,976,963 - Dsui_2805 0.42 -1.8 2,977,097 - Dsui_2805 0.57 -0.9 2,977,433 + -0.3 2,977,433 + +0.7 2,977,441 - -1.6 2,977,441 - -0.3 2,977,451 - -0.3 2,977,487 + +0.7 2,977,490 - -0.3 2,977,518 - +0.3 2,977,567 - -1.3 2,977,615 - +0.7 2,977,667 + +0.7 2,977,687 - -0.3 2,977,736 + +0.7 2,977,867 - Dsui_2806 0.11 -1.9 2,978,097 - Dsui_2806 0.19 +0.7 2,978,228 + +0.7 2,978,234 - Dsui_2806 0.23 +0.7 2,978,281 - +0.7 2,978,560 - Dsui_2806 0.34 +0.7 2,978,647 - Dsui_2806 0.37 +0.7 2,978,762 - Dsui_2806 0.41 -0.3 2,978,764 + -0.3 2,979,126 + +0.7 2,979,150 - Dsui_2806 0.54 +0.7 2,979,171 - Dsui_2806 0.54 -0.1 2,979,261 - Dsui_2806 0.57 -0.3 2,979,364 - Dsui_2806 0.61 -0.9 2,979,421 + +0.7 2,979,433 - +0.7 2,979,455 - +0.7 2,979,715 - Dsui_2806 0.72 +0.7 2,979,753 - Dsui_2806 0.73 -2.5 2,979,803 + -0.3 2,979,811 - Dsui_2806 0.75 -1.3 2,979,932 - Dsui_2806 0.79 -0.4 2,979,932 - Dsui_2806 0.79 +0.7 2,979,952 - Dsui_2806 0.80 -0.3 2,980,088 + +0.7 2,980,121 - Dsui_2806 0.85 -0.9 2,980,379 + -0.3 2,980,553 - +1.7 2,980,782 - Dsui_2807 0.11 -0.9 2,980,953 - Dsui_2807 0.33 -2.5 2,980,967 + Dsui_2807 0.35 -0.9 2,981,048 + +0.7 2,981,056 - Dsui_2807 0.46 +0.1 2,981,181 - Dsui_2807 0.62 -3.7 2,981,227 - Dsui_2807 0.68 -1.3 2,981,274 + Dsui_2807 0.74 +0.7 2,981,384 - Dsui_2807 0.88 -0.9 2,981,389 - Dsui_2807 0.88 +0.7 2,981,389 - Dsui_2807 0.88 -1.6 2,981,465 + +0.7 2,981,468 - -0.3 2,981,517 - +0.3 2,981,550 + -2.3
Or see this region's nucleotide sequence