Strain Fitness in Dechlorosoma suillum PS around Dsui_2803

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2802 and Dsui_2803 are separated by 82 nucleotidesDsui_2803 and Dsui_2804 are separated by 42 nucleotides Dsui_2802: Dsui_2802 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 2,973,062 to 2,974,330 _2802 Dsui_2803: Dsui_2803 - GGDEF domain-containing protein, at 2,974,413 to 2,974,898 _2803 Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557 _2804 Position (kb) 2974 2975Strain fitness (log2 ratio) -2 -1 0 1at 2973.622 kb on - strandat 2973.859 kb on + strand, within Dsui_2802at 2973.862 kb on + strand, within Dsui_2802at 2973.873 kb on + strand, within Dsui_2802at 2974.063 kb on + strand, within Dsui_2802at 2974.112 kb on + strand, within Dsui_2802at 2974.181 kb on + strand, within Dsui_2802at 2974.210 kb on - strandat 2974.257 kb on - strandat 2974.273 kb on + strandat 2974.277 kb on + strandat 2974.290 kb on + strandat 2974.298 kb on - strandat 2974.408 kb on + strandat 2974.534 kb on + strand, within Dsui_2803at 2974.536 kb on + strand, within Dsui_2803at 2974.539 kb on - strandat 2974.561 kb on + strand, within Dsui_2803at 2974.576 kb on + strand, within Dsui_2803at 2974.603 kb on + strand, within Dsui_2803at 2974.686 kb on + strand, within Dsui_2803at 2974.695 kb on + strand, within Dsui_2803at 2974.763 kb on - strand, within Dsui_2803at 2974.777 kb on + strand, within Dsui_2803at 2974.785 kb on - strand, within Dsui_2803at 2974.785 kb on - strand, within Dsui_2803at 2974.800 kb on - strand, within Dsui_2803at 2974.803 kb on + strand, within Dsui_2803at 2974.805 kb on - strand, within Dsui_2803at 2974.863 kb on + strandat 2974.865 kb on - strandat 2975.124 kb on - strand, within Dsui_2804at 2975.145 kb on + strand, within Dsui_2804at 2975.205 kb on - strand, within Dsui_2804at 2975.350 kb on + strandat 2975.358 kb on - strand, within Dsui_2804at 2975.445 kb on + strand, within Dsui_2804at 2975.445 kb on + strandat 2975.779 kb on + strandat 2975.793 kb on - strand, within Dsui_2804

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,973,622 - +0.7
2,973,859 + Dsui_2802 0.63 -0.5
2,973,862 + Dsui_2802 0.63 -2.5
2,973,873 + Dsui_2802 0.64 +0.3
2,974,063 + Dsui_2802 0.79 -0.6
2,974,112 + Dsui_2802 0.83 -0.8
2,974,181 + Dsui_2802 0.88 +0.5
2,974,210 - +0.7
2,974,257 - -0.3
2,974,273 + -0.9
2,974,277 + -0.4
2,974,290 + -0.5
2,974,298 - -0.3
2,974,408 + +0.7
2,974,534 + Dsui_2803 0.25 -0.7
2,974,536 + Dsui_2803 0.25 -1.0
2,974,539 - -0.3
2,974,561 + Dsui_2803 0.30 -2.3
2,974,576 + Dsui_2803 0.34 -1.5
2,974,603 + Dsui_2803 0.39 -1.3
2,974,686 + Dsui_2803 0.56 -0.6
2,974,695 + Dsui_2803 0.58 -0.9
2,974,763 - Dsui_2803 0.72 -1.3
2,974,777 + Dsui_2803 0.75 -0.8
2,974,785 - Dsui_2803 0.77 -2.6
2,974,785 - Dsui_2803 0.77 -2.1
2,974,800 - Dsui_2803 0.80 -0.9
2,974,803 + Dsui_2803 0.80 -1.9
2,974,805 - Dsui_2803 0.81 -1.3
2,974,863 + -1.6
2,974,865 - +0.7
2,975,124 - Dsui_2804 0.11 -0.4
2,975,145 + Dsui_2804 0.13 -1.3
2,975,205 - Dsui_2804 0.16 +0.2
2,975,350 + -1.3
2,975,358 - Dsui_2804 0.26 +0.3
2,975,445 + Dsui_2804 0.31 -0.9
2,975,445 + +0.7
2,975,779 + -0.3
2,975,793 - Dsui_2804 0.53 +0.1

Or see this region's nucleotide sequence