Strain Fitness in Dechlorosoma suillum PS around Dsui_2772

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2770 and Dsui_2771 are separated by 103 nucleotidesDsui_2771 and Dsui_2772 are separated by 209 nucleotidesDsui_2772 and Dsui_2773 are separated by 338 nucleotides Dsui_2770: Dsui_2770 - penicillin-binding protein 1C, at 2,932,961 to 2,935,231 _2770 Dsui_2771: Dsui_2771 - hypothetical protein, at 2,935,335 to 2,935,880 _2771 Dsui_2772: Dsui_2772 - uncharacterized protein, possibly involved in aromatic compounds catabolism, at 2,936,090 to 2,936,551 _2772 Dsui_2773: Dsui_2773 - putative enzyme involved in biosynthesis of extracellular polysaccharides, at 2,936,890 to 2,937,207 _2773 Position (kb) 2936 2937Strain fitness (log2 ratio) -2 -1 0 1at 2935.199 kb on - strandat 2935.397 kb on + strandat 2935.397 kb on + strandat 2935.405 kb on - strand, within Dsui_2771at 2935.405 kb on - strand, within Dsui_2771at 2935.425 kb on - strand, within Dsui_2771at 2935.467 kb on - strand, within Dsui_2771at 2935.472 kb on - strand, within Dsui_2771at 2935.472 kb on - strand, within Dsui_2771at 2935.485 kb on - strand, within Dsui_2771at 2935.522 kb on - strand, within Dsui_2771at 2935.534 kb on - strand, within Dsui_2771at 2935.564 kb on + strandat 2935.572 kb on - strand, within Dsui_2771at 2935.572 kb on - strand, within Dsui_2771at 2935.701 kb on + strandat 2935.855 kb on - strandat 2936.106 kb on - strandat 2936.230 kb on - strand, within Dsui_2772at 2936.241 kb on - strand, within Dsui_2772at 2936.440 kb on - strand, within Dsui_2772at 2936.501 kb on - strand, within Dsui_2772at 2936.662 kb on - strandat 2937.104 kb on - strandat 2937.108 kb on + strand, within Dsui_2773at 2937.120 kb on + strand, within Dsui_2773at 2937.135 kb on - strand, within Dsui_2773at 2937.346 kb on + strandat 2937.441 kb on + strandat 2937.468 kb on + strandat 2937.528 kb on - strandat 2937.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,935,199 - -1.4
2,935,397 + -0.4
2,935,397 + -0.4
2,935,405 - Dsui_2771 0.13 +0.1
2,935,405 - Dsui_2771 0.13 -0.4
2,935,425 - Dsui_2771 0.16 +0.4
2,935,467 - Dsui_2771 0.24 -0.1
2,935,472 - Dsui_2771 0.25 +0.0
2,935,472 - Dsui_2771 0.25 +0.0
2,935,485 - Dsui_2771 0.27 +0.0
2,935,522 - Dsui_2771 0.34 +0.1
2,935,534 - Dsui_2771 0.36 +0.3
2,935,564 + +0.6
2,935,572 - Dsui_2771 0.43 +0.9
2,935,572 - Dsui_2771 0.43 +0.0
2,935,701 + +0.6
2,935,855 - -0.3
2,936,106 - -1.0
2,936,230 - Dsui_2772 0.30 -2.4
2,936,241 - Dsui_2772 0.33 -0.4
2,936,440 - Dsui_2772 0.76 -1.4
2,936,501 - Dsui_2772 0.89 -1.2
2,936,662 - -0.4
2,937,104 - -0.4
2,937,108 + Dsui_2773 0.69 +0.1
2,937,120 + Dsui_2773 0.72 +0.0
2,937,135 - Dsui_2773 0.77 -1.7
2,937,346 + +0.4
2,937,441 + +0.3
2,937,468 + -0.3
2,937,528 - -1.4
2,937,548 - -1.0

Or see this region's nucleotide sequence