Strain Fitness in Dechlorosoma suillum PS around Dsui_2457

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2455 and Dsui_2456 overlap by 14 nucleotidesDsui_2456 and Dsui_2457 are separated by 56 nucleotidesDsui_2457 and Dsui_2458 are separated by 11 nucleotidesDsui_2458 and Dsui_2459 are separated by 16 nucleotides Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741 _2455 Dsui_2456: Dsui_2456 - Glutaredoxin-like domain (DUF836), at 2,614,728 to 2,615,000 _2456 Dsui_2457: Dsui_2457 - GTP-binding protein LepA, at 2,615,057 to 2,616,850 _2457 Dsui_2458: Dsui_2458 - signal peptidase I, at 2,616,862 to 2,617,650 _2458 Dsui_2459: Dsui_2459 - hypothetical protein, at 2,617,667 to 2,618,038 _2459 Position (kb) 2615 2616 2617Strain fitness (log2 ratio) -3 -2 -1 0 1at 2614.159 kb on + strand, within Dsui_2455at 2614.167 kb on - strandat 2614.231 kb on + strand, within Dsui_2455at 2614.248 kb on + strand, within Dsui_2455at 2614.275 kb on + strand, within Dsui_2455at 2614.314 kb on + strand, within Dsui_2455at 2614.393 kb on + strand, within Dsui_2455at 2614.460 kb on - strandat 2614.713 kb on + strandat 2614.721 kb on + strandat 2614.721 kb on - strandat 2614.723 kb on + strandat 2614.754 kb on + strandat 2614.762 kb on - strand, within Dsui_2456at 2614.762 kb on - strand, within Dsui_2456at 2614.764 kb on + strand, within Dsui_2456at 2614.787 kb on + strand, within Dsui_2456at 2614.789 kb on + strand, within Dsui_2456at 2614.963 kb on + strand, within Dsui_2456at 2614.963 kb on + strand, within Dsui_2456at 2615.031 kb on + strandat 2615.055 kb on + strandat 2615.134 kb on + strandat 2615.174 kb on + strandat 2615.271 kb on + strand, within Dsui_2457at 2615.384 kb on + strand, within Dsui_2457at 2615.424 kb on + strand, within Dsui_2457at 2615.704 kb on + strand, within Dsui_2457at 2615.731 kb on + strand, within Dsui_2457at 2615.880 kb on + strand, within Dsui_2457at 2615.955 kb on + strand, within Dsui_2457at 2616.309 kb on + strand, within Dsui_2457at 2616.309 kb on + strand, within Dsui_2457at 2616.309 kb on + strand, within Dsui_2457at 2616.379 kb on + strand, within Dsui_2457at 2616.427 kb on + strand, within Dsui_2457at 2616.529 kb on + strand, within Dsui_2457at 2617.649 kb on + strandat 2617.670 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
2,614,159 + Dsui_2455 0.60 -0.1
2,614,167 - +0.5
2,614,231 + Dsui_2455 0.65 -0.6
2,614,248 + Dsui_2455 0.66 +0.0
2,614,275 + Dsui_2455 0.68 +0.1
2,614,314 + Dsui_2455 0.70 -0.1
2,614,393 + Dsui_2455 0.76 -0.2
2,614,460 - +0.5
2,614,713 + +0.0
2,614,721 + -0.3
2,614,721 - -1.1
2,614,723 + -0.1
2,614,754 + -0.1
2,614,762 - Dsui_2456 0.12 +0.5
2,614,762 - Dsui_2456 0.12 -3.0
2,614,764 + Dsui_2456 0.13 -0.2
2,614,787 + Dsui_2456 0.22 +0.1
2,614,789 + Dsui_2456 0.22 -0.1
2,614,963 + Dsui_2456 0.86 +0.0
2,614,963 + Dsui_2456 0.86 -0.5
2,615,031 + +0.2
2,615,055 + -0.4
2,615,134 + -1.8
2,615,174 + -3.4
2,615,271 + Dsui_2457 0.12 -3.0
2,615,384 + Dsui_2457 0.18 -0.1
2,615,424 + Dsui_2457 0.20 -1.9
2,615,704 + Dsui_2457 0.36 -2.3
2,615,731 + Dsui_2457 0.38 -1.8
2,615,880 + Dsui_2457 0.46 -1.7
2,615,955 + Dsui_2457 0.50 -1.9
2,616,309 + Dsui_2457 0.70 -1.5
2,616,309 + Dsui_2457 0.70 -1.9
2,616,309 + Dsui_2457 0.70 -0.9
2,616,379 + Dsui_2457 0.74 -1.9
2,616,427 + Dsui_2457 0.76 -2.0
2,616,529 + Dsui_2457 0.82 -2.0
2,617,649 + +0.3
2,617,670 - +0.5

Or see this region's nucleotide sequence