Strain Fitness in Dechlorosoma suillum PS around Dsui_2325

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2322 and Dsui_2323 are separated by 3 nucleotidesDsui_2323 and Dsui_2324 are separated by 54 nucleotidesDsui_2324 and Dsui_2325 are separated by 70 nucleotidesDsui_2325 and Dsui_2326 are separated by 151 nucleotidesDsui_2326 and Dsui_2327 are separated by 90 nucleotides Dsui_2322: Dsui_2322 - hypothetical protein, at 2,478,192 to 2,478,968 _2322 Dsui_2323: Dsui_2323 - protein of unknown function (DUF1857), at 2,478,972 to 2,479,445 _2323 Dsui_2324: Dsui_2324 - hypothetical protein, at 2,479,500 to 2,479,868 _2324 Dsui_2325: Dsui_2325 - hypothetical protein, at 2,479,939 to 2,480,343 _2325 Dsui_2326: Dsui_2326 - hypothetical protein, at 2,480,495 to 2,480,734 _2326 Dsui_2327: Dsui_2327 - putative toxin-antitoxin system toxin component, PIN family, at 2,480,825 to 2,481,295 _2327 Position (kb) 2479 2480 2481Strain fitness (log2 ratio) -2 -1 0 1at 2478.956 kb on + strandat 2478.970 kb on - strandat 2479.043 kb on + strand, within Dsui_2323at 2479.096 kb on + strand, within Dsui_2323at 2479.108 kb on - strandat 2479.170 kb on + strand, within Dsui_2323at 2479.228 kb on + strand, within Dsui_2323at 2479.354 kb on + strand, within Dsui_2323at 2479.374 kb on + strand, within Dsui_2323at 2479.399 kb on + strandat 2479.407 kb on - strandat 2479.435 kb on + strandat 2479.570 kb on - strand, within Dsui_2324at 2479.600 kb on + strand, within Dsui_2324at 2479.673 kb on + strand, within Dsui_2324at 2479.712 kb on + strand, within Dsui_2324at 2479.753 kb on + strand, within Dsui_2324at 2479.795 kb on - strand, within Dsui_2324at 2479.837 kb on + strandat 2479.884 kb on - strandat 2480.024 kb on + strandat 2480.202 kb on - strand, within Dsui_2325at 2480.207 kb on - strand, within Dsui_2325at 2480.238 kb on - strand, within Dsui_2325at 2480.257 kb on - strand, within Dsui_2325at 2480.288 kb on + strandat 2480.296 kb on - strand, within Dsui_2325at 2480.419 kb on - strandat 2480.706 kb on - strand, within Dsui_2326at 2480.745 kb on - strandat 2481.077 kb on - strand, within Dsui_2327at 2481.197 kb on + strandat 2481.230 kb on + strandat 2481.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,478,956 + +0.6
2,478,970 - -0.4
2,479,043 + Dsui_2323 0.15 -0.8
2,479,096 + Dsui_2323 0.26 +1.5
2,479,108 - +0.6
2,479,170 + Dsui_2323 0.42 +0.9
2,479,228 + Dsui_2323 0.54 +0.6
2,479,354 + Dsui_2323 0.81 -0.4
2,479,374 + Dsui_2323 0.85 -0.5
2,479,399 + +1.2
2,479,407 - +0.6
2,479,435 + -1.7
2,479,570 - Dsui_2324 0.19 -0.4
2,479,600 + Dsui_2324 0.27 -1.2
2,479,673 + Dsui_2324 0.47 -2.1
2,479,712 + Dsui_2324 0.57 -0.5
2,479,753 + Dsui_2324 0.69 -1.4
2,479,795 - Dsui_2324 0.80 -1.0
2,479,837 + -0.7
2,479,884 - -1.7
2,480,024 + -0.4
2,480,202 - Dsui_2325 0.65 +0.0
2,480,207 - Dsui_2325 0.66 -2.0
2,480,238 - Dsui_2325 0.74 +0.6
2,480,257 - Dsui_2325 0.79 -2.2
2,480,288 + -0.4
2,480,296 - Dsui_2325 0.88 -1.7
2,480,419 - +1.6
2,480,706 - Dsui_2326 0.88 -0.6
2,480,745 - +0.1
2,481,077 - Dsui_2327 0.54 -0.5
2,481,197 + -0.4
2,481,230 + +0.6
2,481,268 - +1.6

Or see this region's nucleotide sequence