Strain Fitness in Dechlorosoma suillum PS around Dsui_2321

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2320 and Dsui_2321 are separated by 52 nucleotidesDsui_2321 and Dsui_2322 are separated by 45 nucleotidesDsui_2322 and Dsui_2323 are separated by 3 nucleotides Dsui_2320: Dsui_2320 - Protein of unknown function (DUF2863), at 2,474,840 to 2,476,018 _2320 Dsui_2321: Dsui_2321 - site-specific recombinase, at 2,476,071 to 2,478,146 _2321 Dsui_2322: Dsui_2322 - hypothetical protein, at 2,478,192 to 2,478,968 _2322 Dsui_2323: Dsui_2323 - protein of unknown function (DUF1857), at 2,478,972 to 2,479,445 _2323 Position (kb) 2476 2477 2478 2479Strain fitness (log2 ratio) -2 -1 0 1at 2475.103 kb on - strand, within Dsui_2320at 2475.220 kb on + strand, within Dsui_2320at 2475.376 kb on + strand, within Dsui_2320at 2475.532 kb on + strandat 2475.598 kb on + strandat 2475.631 kb on + strand, within Dsui_2320at 2475.698 kb on + strandat 2475.734 kb on + strand, within Dsui_2320at 2475.830 kb on + strandat 2475.911 kb on - strandat 2475.981 kb on - strandat 2475.981 kb on - strandat 2476.020 kb on + strandat 2476.020 kb on + strandat 2476.028 kb on - strandat 2476.038 kb on - strandat 2476.051 kb on - strandat 2476.134 kb on + strandat 2476.344 kb on - strand, within Dsui_2321at 2476.763 kb on - strand, within Dsui_2321at 2476.937 kb on - strand, within Dsui_2321at 2476.985 kb on + strandat 2477.021 kb on + strandat 2477.091 kb on + strandat 2477.165 kb on + strand, within Dsui_2321at 2477.481 kb on - strand, within Dsui_2321at 2477.500 kb on - strand, within Dsui_2321at 2477.500 kb on - strand, within Dsui_2321at 2477.515 kb on - strand, within Dsui_2321at 2477.579 kb on + strandat 2477.625 kb on + strandat 2477.700 kb on - strand, within Dsui_2321at 2477.701 kb on - strand, within Dsui_2321at 2477.702 kb on - strand, within Dsui_2321at 2477.705 kb on - strand, within Dsui_2321at 2477.779 kb on + strandat 2477.808 kb on + strandat 2478.051 kb on - strandat 2478.129 kb on - strandat 2478.247 kb on + strandat 2478.377 kb on + strand, within Dsui_2322at 2478.382 kb on + strand, within Dsui_2322at 2478.415 kb on + strand, within Dsui_2322at 2478.532 kb on - strand, within Dsui_2322at 2478.568 kb on - strand, within Dsui_2322at 2478.574 kb on - strand, within Dsui_2322at 2478.593 kb on + strand, within Dsui_2322at 2478.617 kb on + strand, within Dsui_2322at 2478.625 kb on - strandat 2478.673 kb on + strand, within Dsui_2322at 2478.682 kb on + strand, within Dsui_2322at 2478.724 kb on - strand, within Dsui_2322at 2478.749 kb on - strand, within Dsui_2322at 2478.776 kb on + strand, within Dsui_2322at 2478.837 kb on - strandat 2478.858 kb on + strand, within Dsui_2322at 2478.877 kb on + strand, within Dsui_2322at 2478.909 kb on - strandat 2478.956 kb on + strandat 2478.970 kb on - strandat 2479.043 kb on + strand, within Dsui_2323at 2479.096 kb on + strand, within Dsui_2323at 2479.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,475,103 - Dsui_2320 0.22 -0.2
2,475,220 + Dsui_2320 0.32 +0.6
2,475,376 + Dsui_2320 0.45 -2.0
2,475,532 + +0.6
2,475,598 + -0.4
2,475,631 + Dsui_2320 0.67 -2.2
2,475,698 + +0.6
2,475,734 + Dsui_2320 0.76 +0.6
2,475,830 + +0.6
2,475,911 - -0.3
2,475,981 - +0.3
2,475,981 - +0.1
2,476,020 + +0.6
2,476,020 + +0.6
2,476,028 - +0.2
2,476,038 - -0.2
2,476,051 - +0.2
2,476,134 + +0.6
2,476,344 - Dsui_2321 0.13 +0.6
2,476,763 - Dsui_2321 0.33 -1.4
2,476,937 - Dsui_2321 0.42 -2.2
2,476,985 + -1.4
2,477,021 + -1.0
2,477,091 + +0.6
2,477,165 + Dsui_2321 0.53 -0.4
2,477,481 - Dsui_2321 0.68 -1.0
2,477,500 - Dsui_2321 0.69 +0.6
2,477,500 - Dsui_2321 0.69 -1.4
2,477,515 - Dsui_2321 0.70 -2.7
2,477,579 + -0.4
2,477,625 + +0.6
2,477,700 - Dsui_2321 0.78 -0.4
2,477,701 - Dsui_2321 0.79 -1.9
2,477,702 - Dsui_2321 0.79 -2.6
2,477,705 - Dsui_2321 0.79 -0.4
2,477,779 + -0.4
2,477,808 + -0.4
2,478,051 - -1.7
2,478,129 - -0.4
2,478,247 + -2.2
2,478,377 + Dsui_2322 0.24 -0.3
2,478,382 + Dsui_2322 0.24 -0.4
2,478,415 + Dsui_2322 0.29 -1.0
2,478,532 - Dsui_2322 0.44 -1.0
2,478,568 - Dsui_2322 0.48 -0.4
2,478,574 - Dsui_2322 0.49 -1.0
2,478,593 + Dsui_2322 0.52 -2.3
2,478,617 + Dsui_2322 0.55 +0.6
2,478,625 - +0.6
2,478,673 + Dsui_2322 0.62 -0.4
2,478,682 + Dsui_2322 0.63 -1.3
2,478,724 - Dsui_2322 0.68 -1.0
2,478,749 - Dsui_2322 0.72 +0.6
2,478,776 + Dsui_2322 0.75 -0.4
2,478,837 - +0.6
2,478,858 + Dsui_2322 0.86 -1.4
2,478,877 + Dsui_2322 0.88 +0.0
2,478,909 - -1.0
2,478,956 + +0.6
2,478,970 - -0.4
2,479,043 + Dsui_2323 0.15 -0.8
2,479,096 + Dsui_2323 0.26 +1.5
2,479,108 - +0.6

Or see this region's nucleotide sequence