Strain Fitness in Dechlorosoma suillum PS around Dsui_2125

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2124 and Dsui_2125 are separated by 17 nucleotidesDsui_2125 and Dsui_2126 are separated by 197 nucleotides Dsui_2124: Dsui_2124 - methyl-accepting chemotaxis protein, at 2,250,180 to 2,251,283 _2124 Dsui_2125: Dsui_2125 - PAS domain S-box, at 2,251,301 to 2,254,285 _2125 Dsui_2126: Dsui_2126 - alanine dehydrogenase, at 2,254,483 to 2,255,574 _2126 Position (kb) 2251 2252 2253 2254 2255Strain fitness (log2 ratio) -2 -1 0 1at 2250.333 kb on + strandat 2250.761 kb on + strandat 2250.881 kb on - strandat 2250.924 kb on + strand, within Dsui_2124at 2250.944 kb on + strandat 2250.980 kb on + strandat 2251.023 kb on + strandat 2251.221 kb on + strandat 2251.358 kb on + strandat 2251.511 kb on - strandat 2251.601 kb on + strand, within Dsui_2125at 2251.609 kb on - strandat 2251.638 kb on - strandat 2251.643 kb on + strand, within Dsui_2125at 2251.772 kb on - strand, within Dsui_2125at 2251.839 kb on + strandat 2251.901 kb on - strand, within Dsui_2125at 2252.037 kb on + strandat 2252.109 kb on + strandat 2252.217 kb on - strandat 2252.370 kb on + strand, within Dsui_2125at 2252.379 kb on - strandat 2252.404 kb on + strand, within Dsui_2125at 2252.414 kb on + strandat 2252.524 kb on + strand, within Dsui_2125at 2252.572 kb on - strand, within Dsui_2125at 2252.662 kb on - strand, within Dsui_2125at 2252.843 kb on + strandat 2252.972 kb on - strandat 2253.053 kb on - strand, within Dsui_2125at 2253.235 kb on - strandat 2253.414 kb on + strandat 2253.426 kb on + strandat 2253.475 kb on + strandat 2253.560 kb on + strandat 2253.601 kb on - strand, within Dsui_2125at 2253.682 kb on - strand, within Dsui_2125at 2253.690 kb on + strandat 2253.737 kb on - strandat 2253.869 kb on - strand, within Dsui_2125at 2253.869 kb on - strandat 2254.177 kb on + strandat 2254.177 kb on + strandat 2254.222 kb on + strandat 2254.230 kb on - strandat 2254.235 kb on + strandat 2254.336 kb on + strandat 2254.342 kb on - strandat 2254.393 kb on - strandat 2254.422 kb on + strandat 2254.444 kb on + strandat 2254.553 kb on - strandat 2254.675 kb on - strand, within Dsui_2126at 2254.770 kb on - strand, within Dsui_2126at 2255.248 kb on - strand, within Dsui_2126at 2255.255 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,250,333 + +0.8
2,250,761 + +0.8
2,250,881 - +0.8
2,250,924 + Dsui_2124 0.67 -0.8
2,250,944 + -0.2
2,250,980 + +0.8
2,251,023 + -0.2
2,251,221 + -0.2
2,251,358 + +0.8
2,251,511 - -0.2
2,251,601 + Dsui_2125 0.10 +0.8
2,251,609 - -1.2
2,251,638 - +0.8
2,251,643 + Dsui_2125 0.11 -1.2
2,251,772 - Dsui_2125 0.16 -2.0
2,251,839 + -0.2
2,251,901 - Dsui_2125 0.20 -0.2
2,252,037 + -0.2
2,252,109 + -0.2
2,252,217 - +0.8
2,252,370 + Dsui_2125 0.36 -0.2
2,252,379 - -0.8
2,252,404 + Dsui_2125 0.37 -0.8
2,252,414 + -0.8
2,252,524 + Dsui_2125 0.41 -2.5
2,252,572 - Dsui_2125 0.43 -0.2
2,252,662 - Dsui_2125 0.46 -0.8
2,252,843 + +0.8
2,252,972 - -0.2
2,253,053 - Dsui_2125 0.59 -0.3
2,253,235 - +0.8
2,253,414 + +0.8
2,253,426 + -0.2
2,253,475 + +0.8
2,253,560 + +0.8
2,253,601 - Dsui_2125 0.77 -2.7
2,253,682 - Dsui_2125 0.80 -1.1
2,253,690 + +0.8
2,253,737 - +0.8
2,253,869 - Dsui_2125 0.86 +0.8
2,253,869 - -0.2
2,254,177 + +0.8
2,254,177 + +0.8
2,254,222 + -0.2
2,254,230 - +0.8
2,254,235 + -0.2
2,254,336 + -0.2
2,254,342 - -0.2
2,254,393 - -0.2
2,254,422 + -0.8
2,254,444 + +0.8
2,254,553 - -0.2
2,254,675 - Dsui_2126 0.18 -0.2
2,254,770 - Dsui_2126 0.26 -1.2
2,255,248 - Dsui_2126 0.70 -1.2
2,255,255 + +0.8

Or see this region's nucleotide sequence