Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2058 and Dsui_2059 overlap by 4 nucleotides Dsui_2059 and Dsui_2060 overlap by 1 nucleotides Dsui_2060 and Dsui_2061 are separated by 87 nucleotides
Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136
_2058
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877
_2060
Dsui_2061: Dsui_2061 - ABC-type branched-chain amino acid transport system, periplasmic component, at 2,179,965 to 2,181,119
_2061
Position (kb)
2178
2179
2180 Strain fitness (log2 ratio)
-2
-1
0
1 at 2178.017 kb on - strand, within Dsui_2058 at 2178.144 kb on - strand at 2178.146 kb on + strand at 2178.200 kb on + strand at 2178.299 kb on - strand, within Dsui_2059 at 2178.299 kb on - strand, within Dsui_2059 at 2178.334 kb on + strand, within Dsui_2059 at 2178.707 kb on - strand, within Dsui_2059 at 2178.728 kb on - strand, within Dsui_2059 at 2178.883 kb on + strand, within Dsui_2059 at 2179.198 kb on + strand, within Dsui_2060 at 2179.410 kb on - strand, within Dsui_2060 at 2179.723 kb on + strand, within Dsui_2060 at 2179.774 kb on + strand, within Dsui_2060 at 2179.960 kb on + strand at 2179.996 kb on + strand at 2180.115 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.296 kb on - strand, within Dsui_2061 at 2180.326 kb on + strand, within Dsui_2061 at 2180.362 kb on - strand, within Dsui_2061 at 2180.405 kb on + strand, within Dsui_2061 at 2180.415 kb on - strand, within Dsui_2061 at 2180.447 kb on + strand at 2180.457 kb on + strand, within Dsui_2061 at 2180.479 kb on + strand, within Dsui_2061 at 2180.487 kb on - strand, within Dsui_2061 at 2180.498 kb on - strand, within Dsui_2061 at 2180.819 kb on + strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,178,017 - Dsui_2058 0.85 +0.3 2,178,144 - +0.4 2,178,146 + -0.2 2,178,200 + -0.2 2,178,299 - Dsui_2059 0.19 +0.3 2,178,299 - Dsui_2059 0.19 -0.0 2,178,334 + Dsui_2059 0.23 -0.2 2,178,707 - Dsui_2059 0.66 +0.3 2,178,728 - Dsui_2059 0.69 +0.3 2,178,883 + Dsui_2059 0.87 -0.8 2,179,198 + Dsui_2060 0.23 -0.2 2,179,410 - Dsui_2060 0.47 +0.1 2,179,723 + Dsui_2060 0.82 -0.2 2,179,774 + Dsui_2060 0.88 +0.8 2,179,960 + +0.8 2,179,996 + -2.0 2,180,115 - Dsui_2061 0.13 +0.4 2,180,244 - Dsui_2061 0.24 +0.6 2,180,244 - Dsui_2061 0.24 +0.6 2,180,244 - Dsui_2061 0.24 +0.3 2,180,296 - Dsui_2061 0.29 +0.5 2,180,326 + Dsui_2061 0.31 +0.8 2,180,362 - Dsui_2061 0.34 +0.5 2,180,405 + Dsui_2061 0.38 -0.2 2,180,415 - Dsui_2061 0.39 +0.3 2,180,447 + -0.8 2,180,457 + Dsui_2061 0.43 +0.8 2,180,479 + Dsui_2061 0.45 -1.2 2,180,487 - Dsui_2061 0.45 +0.5 2,180,498 - Dsui_2061 0.46 +0.7 2,180,819 + Dsui_2061 0.74 -0.2 2,180,827 - Dsui_2061 0.75 +0.2 2,180,827 - Dsui_2061 0.75 +0.1
Or see this region's nucleotide sequence