Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2056 and Dsui_2057 are separated by 498 nucleotides Dsui_2057 and Dsui_2058 overlap by 1 nucleotides Dsui_2058 and Dsui_2059 overlap by 4 nucleotides
Dsui_2056: Dsui_2056 - hypothetical protein, at 2,175,588 to 2,176,142
_2056
Dsui_2057: Dsui_2057 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,176,641 to 2,177,354
_2057
Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136
_2058
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Position (kb)
2176
2177
2178 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2175.678 kb on - strand, within Dsui_2056 at 2175.682 kb on + strand, within Dsui_2056 at 2175.682 kb on + strand, within Dsui_2056 at 2175.682 kb on + strand, within Dsui_2056 at 2175.690 kb on - strand, within Dsui_2056 at 2175.690 kb on - strand, within Dsui_2056 at 2175.690 kb on - strand, within Dsui_2056 at 2175.698 kb on + strand, within Dsui_2056 at 2175.706 kb on - strand, within Dsui_2056 at 2175.719 kb on + strand, within Dsui_2056 at 2175.719 kb on + strand, within Dsui_2056 at 2175.727 kb on - strand, within Dsui_2056 at 2175.727 kb on - strand, within Dsui_2056 at 2175.760 kb on - strand, within Dsui_2056 at 2175.760 kb on - strand, within Dsui_2056 at 2175.760 kb on - strand, within Dsui_2056 at 2175.801 kb on - strand at 2175.805 kb on + strand, within Dsui_2056 at 2175.811 kb on + strand, within Dsui_2056 at 2175.831 kb on - strand, within Dsui_2056 at 2175.867 kb on - strand, within Dsui_2056 at 2175.877 kb on - strand, within Dsui_2056 at 2175.887 kb on + strand, within Dsui_2056 at 2175.895 kb on + strand, within Dsui_2056 at 2175.912 kb on - strand, within Dsui_2056 at 2175.959 kb on - strand, within Dsui_2056 at 2175.973 kb on + strand at 2175.984 kb on + strand, within Dsui_2056 at 2176.051 kb on + strand, within Dsui_2056 at 2176.071 kb on - strand, within Dsui_2056 at 2176.071 kb on - strand, within Dsui_2056 at 2176.105 kb on - strand at 2176.105 kb on - strand at 2176.119 kb on - strand at 2176.138 kb on + strand at 2176.185 kb on - strand at 2176.199 kb on + strand at 2176.199 kb on + strand at 2176.214 kb on - strand at 2176.217 kb on - strand at 2176.219 kb on - strand at 2176.219 kb on - strand at 2176.278 kb on + strand at 2176.363 kb on + strand at 2176.667 kb on + strand at 2176.807 kb on + strand, within Dsui_2057 at 2176.891 kb on - strand, within Dsui_2057 at 2176.970 kb on + strand, within Dsui_2057 at 2176.978 kb on - strand, within Dsui_2057 at 2177.188 kb on + strand at 2177.196 kb on - strand, within Dsui_2057 at 2177.196 kb on - strand, within Dsui_2057 at 2177.231 kb on - strand, within Dsui_2057 at 2177.299 kb on + strand at 2177.483 kb on - strand, within Dsui_2058 at 2177.519 kb on - strand, within Dsui_2058 at 2177.700 kb on - strand, within Dsui_2058 at 2177.905 kb on + strand, within Dsui_2058 at 2178.017 kb on - strand, within Dsui_2058 at 2178.144 kb on - strand at 2178.146 kb on + strand at 2178.200 kb on + strand at 2178.299 kb on - strand, within Dsui_2059 at 2178.299 kb on - strand, within Dsui_2059 at 2178.334 kb on + strand, within Dsui_2059
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,175,678 - Dsui_2056 0.16 +0.8 2,175,682 + Dsui_2056 0.17 +0.8 2,175,682 + Dsui_2056 0.17 -2.0 2,175,682 + Dsui_2056 0.17 +0.8 2,175,690 - Dsui_2056 0.18 -0.8 2,175,690 - Dsui_2056 0.18 -1.5 2,175,690 - Dsui_2056 0.18 +0.8 2,175,698 + Dsui_2056 0.20 +0.8 2,175,706 - Dsui_2056 0.21 +0.8 2,175,719 + Dsui_2056 0.24 +0.8 2,175,719 + Dsui_2056 0.24 -0.8 2,175,727 - Dsui_2056 0.25 +0.8 2,175,727 - Dsui_2056 0.25 +0.8 2,175,760 - Dsui_2056 0.31 -1.5 2,175,760 - Dsui_2056 0.31 -0.8 2,175,760 - Dsui_2056 0.31 +0.8 2,175,801 - +0.8 2,175,805 + Dsui_2056 0.39 +0.8 2,175,811 + Dsui_2056 0.40 -0.8 2,175,831 - Dsui_2056 0.44 +0.8 2,175,867 - Dsui_2056 0.50 +0.8 2,175,877 - Dsui_2056 0.52 -1.8 2,175,887 + Dsui_2056 0.54 +0.8 2,175,895 + Dsui_2056 0.55 -3.0 2,175,912 - Dsui_2056 0.58 -1.5 2,175,959 - Dsui_2056 0.67 +0.8 2,175,973 + +0.8 2,175,984 + Dsui_2056 0.71 -0.8 2,176,051 + Dsui_2056 0.83 +0.8 2,176,071 - Dsui_2056 0.87 -1.8 2,176,071 - Dsui_2056 0.87 -1.8 2,176,105 - -2.9 2,176,105 - -0.8 2,176,119 - +0.8 2,176,138 + +0.8 2,176,185 - -0.8 2,176,199 + -1.5 2,176,199 + -1.2 2,176,214 - -1.5 2,176,217 - -0.2 2,176,219 - -0.2 2,176,219 - -0.2 2,176,278 + +0.8 2,176,363 + +0.8 2,176,667 + -0.2 2,176,807 + Dsui_2057 0.23 +0.8 2,176,891 - Dsui_2057 0.35 +0.5 2,176,970 + Dsui_2057 0.46 -2.0 2,176,978 - Dsui_2057 0.47 +0.2 2,177,188 + +0.8 2,177,196 - Dsui_2057 0.78 -0.0 2,177,196 - Dsui_2057 0.78 +0.2 2,177,231 - Dsui_2057 0.83 +0.4 2,177,299 + +0.8 2,177,483 - Dsui_2058 0.16 -0.0 2,177,519 - Dsui_2058 0.21 +0.5 2,177,700 - Dsui_2058 0.44 +0.1 2,177,905 + Dsui_2058 0.70 -0.2 2,178,017 - Dsui_2058 0.85 +0.3 2,178,144 - +0.4 2,178,146 + -0.2 2,178,200 + -0.2 2,178,299 - Dsui_2059 0.19 +0.3 2,178,299 - Dsui_2059 0.19 -0.0 2,178,334 + Dsui_2059 0.23 -0.2
Or see this region's nucleotide sequence