Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1863 and Dsui_1864 are separated by 41 nucleotides Dsui_1864 and Dsui_1865 are separated by 5 nucleotides
Dsui_1863: Dsui_1863 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,956,766 to 1,957,806
_1863
Dsui_1864: Dsui_1864 - hypothetical protein, at 1,957,848 to 1,959,011
_1864
Dsui_1865: Dsui_1865 - PAS domain S-box, at 1,959,017 to 1,962,097
_1865
Position (kb)
1957
1958
1959
1960 Strain fitness (log2 ratio)
-2
-1
0
1 at 1956.880 kb on + strand, within Dsui_1863 at 1956.958 kb on - strand at 1957.026 kb on + strand, within Dsui_1863 at 1957.057 kb on - strand at 1957.280 kb on + strand, within Dsui_1863 at 1957.280 kb on + strand, within Dsui_1863 at 1957.424 kb on - strand at 1957.424 kb on - strand at 1957.476 kb on + strand, within Dsui_1863 at 1957.671 kb on + strand, within Dsui_1863 at 1957.671 kb on + strand at 1957.801 kb on + strand at 1957.857 kb on + strand at 1957.890 kb on + strand at 1957.903 kb on - strand at 1958.000 kb on - strand, within Dsui_1864 at 1958.133 kb on + strand, within Dsui_1864 at 1958.174 kb on + strand, within Dsui_1864 at 1958.277 kb on + strand, within Dsui_1864 at 1958.357 kb on + strand at 1958.369 kb on + strand, within Dsui_1864 at 1958.412 kb on - strand at 1958.450 kb on - strand at 1958.511 kb on + strand, within Dsui_1864 at 1958.519 kb on - strand at 1958.616 kb on + strand, within Dsui_1864 at 1958.649 kb on + strand, within Dsui_1864 at 1958.667 kb on - strand at 1958.696 kb on + strand, within Dsui_1864 at 1958.704 kb on - strand at 1958.881 kb on + strand, within Dsui_1864 at 1959.231 kb on + strand at 1959.391 kb on - strand at 1959.395 kb on - strand, within Dsui_1865 at 1959.590 kb on + strand, within Dsui_1865 at 1959.598 kb on - strand, within Dsui_1865 at 1959.631 kb on + strand, within Dsui_1865 at 1959.884 kb on + strand, within Dsui_1865 at 1959.891 kb on + strand, within Dsui_1865 at 1959.891 kb on + strand, within Dsui_1865 at 1959.899 kb on - strand at 1959.905 kb on - strand at 1959.920 kb on + strand, within Dsui_1865
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,956,880 + Dsui_1863 0.11 -0.7 1,956,958 - +0.7 1,957,026 + Dsui_1863 0.25 -0.3 1,957,057 - -0.9 1,957,280 + Dsui_1863 0.49 +0.7 1,957,280 + Dsui_1863 0.49 -0.3 1,957,424 - +0.7 1,957,424 - +0.7 1,957,476 + Dsui_1863 0.68 -0.9 1,957,671 + Dsui_1863 0.87 -2.7 1,957,671 + +0.7 1,957,801 + -1.3 1,957,857 + -0.9 1,957,890 + -0.3 1,957,903 - -0.9 1,958,000 - Dsui_1864 0.13 -1.7 1,958,133 + Dsui_1864 0.24 -0.3 1,958,174 + Dsui_1864 0.28 -0.8 1,958,277 + Dsui_1864 0.37 -1.0 1,958,357 + +0.7 1,958,369 + Dsui_1864 0.45 +1.7 1,958,412 - -0.3 1,958,450 - -0.3 1,958,511 + Dsui_1864 0.57 -0.3 1,958,519 - -0.9 1,958,616 + Dsui_1864 0.66 -0.9 1,958,649 + Dsui_1864 0.69 -0.9 1,958,667 - +0.7 1,958,696 + Dsui_1864 0.73 -0.3 1,958,704 - +0.7 1,958,881 + Dsui_1864 0.89 -0.3 1,959,231 + -0.3 1,959,391 - -0.3 1,959,395 - Dsui_1865 0.12 -2.0 1,959,590 + Dsui_1865 0.19 -0.3 1,959,598 - Dsui_1865 0.19 -2.5 1,959,631 + Dsui_1865 0.20 +0.7 1,959,884 + Dsui_1865 0.28 +0.7 1,959,891 + Dsui_1865 0.28 -0.3 1,959,891 + Dsui_1865 0.28 -1.7 1,959,899 - +0.7 1,959,905 - +0.7 1,959,920 + Dsui_1865 0.29 -0.3
Or see this region's nucleotide sequence