Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1821 and Dsui_1822 are separated by 130 nucleotides Dsui_1822 and Dsui_1823 are separated by 15 nucleotides Dsui_1823 and Dsui_1824 are separated by 118 nucleotides
Dsui_1821: Dsui_1821 - esterase/lipase, at 1,919,326 to 1,920,243
_1821
Dsui_1822: Dsui_1822 - putative membrane protein, at 1,920,374 to 1,920,709
_1822
Dsui_1823: Dsui_1823 - beta-lactamase class D, at 1,920,725 to 1,921,618
_1823
Dsui_1824: Dsui_1824 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,921,737 to 1,923,686
_1824
Position (kb)
1920
1921
1922 Strain fitness (log2 ratio)
-2
-1
0
1 at 1919.742 kb on + strand at 1920.053 kb on - strand at 1920.060 kb on + strand at 1920.060 kb on + strand at 1920.068 kb on - strand at 1920.078 kb on - strand, within Dsui_1821 at 1920.135 kb on - strand at 1920.141 kb on + strand at 1920.261 kb on + strand at 1920.274 kb on - strand at 1920.384 kb on + strand at 1920.420 kb on + strand, within Dsui_1822 at 1920.443 kb on + strand, within Dsui_1822 at 1920.518 kb on - strand at 1920.548 kb on + strand, within Dsui_1822 at 1920.553 kb on + strand at 1920.556 kb on - strand at 1920.651 kb on + strand, within Dsui_1822 at 1920.651 kb on + strand at 1920.659 kb on - strand at 1920.711 kb on - strand at 1920.796 kb on + strand at 1920.917 kb on - strand, within Dsui_1823 at 1920.985 kb on - strand at 1921.043 kb on + strand at 1921.066 kb on + strand at 1921.091 kb on + strand, within Dsui_1823 at 1921.160 kb on + strand, within Dsui_1823 at 1921.203 kb on + strand, within Dsui_1823 at 1921.272 kb on - strand, within Dsui_1823 at 1921.610 kb on + strand at 1921.645 kb on + strand at 1921.673 kb on - strand at 1921.720 kb on - strand at 1921.722 kb on + strand at 1921.813 kb on + strand at 1922.065 kb on - strand at 1922.125 kb on + strand, within Dsui_1824 at 1922.145 kb on - strand, within Dsui_1824 at 1922.223 kb on + strand at 1922.486 kb on + strand, within Dsui_1824 at 1922.524 kb on - strand, within Dsui_1824 at 1922.531 kb on + strand at 1922.539 kb on - strand at 1922.539 kb on - strand, within Dsui_1824 at 1922.539 kb on - strand at 1922.563 kb on - strand at 1922.569 kb on - strand, within Dsui_1824
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,919,742 + +0.5 1,920,053 - +0.5 1,920,060 + +0.5 1,920,060 + +0.5 1,920,068 - +0.5 1,920,078 - Dsui_1821 0.82 -1.0 1,920,135 - +0.5 1,920,141 + +0.5 1,920,261 + -1.0 1,920,274 - -0.5 1,920,384 + +0.5 1,920,420 + Dsui_1822 0.14 -0.5 1,920,443 + Dsui_1822 0.21 -1.0 1,920,518 - -0.5 1,920,548 + Dsui_1822 0.52 -1.8 1,920,553 + +0.5 1,920,556 - +0.5 1,920,651 + Dsui_1822 0.82 -0.5 1,920,651 + +0.5 1,920,659 - +0.5 1,920,711 - +0.5 1,920,796 + -1.5 1,920,917 - Dsui_1823 0.21 -2.0 1,920,985 - -1.0 1,921,043 + +0.5 1,921,066 + +0.5 1,921,091 + Dsui_1823 0.41 -1.0 1,921,160 + Dsui_1823 0.49 +0.5 1,921,203 + Dsui_1823 0.53 -0.5 1,921,272 - Dsui_1823 0.61 -0.5 1,921,610 + -1.0 1,921,645 + -1.0 1,921,673 - +0.5 1,921,720 - -0.5 1,921,722 + -0.5 1,921,813 + -0.5 1,922,065 - +0.5 1,922,125 + Dsui_1824 0.20 +0.5 1,922,145 - Dsui_1824 0.21 -0.5 1,922,223 + +0.5 1,922,486 + Dsui_1824 0.38 -1.0 1,922,524 - Dsui_1824 0.40 -2.0 1,922,531 + +0.5 1,922,539 - +0.5 1,922,539 - Dsui_1824 0.41 +0.5 1,922,539 - +0.5 1,922,563 - +0.5 1,922,569 - Dsui_1824 0.43 -0.5
Or see this region's nucleotide sequence