Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1659 and Dsui_1660 are separated by 160 nucleotides Dsui_1660 and Dsui_1661 overlap by 1 nucleotides Dsui_1661 and Dsui_1662 are separated by 119 nucleotides
Dsui_1659: Dsui_1659 - Uncharacterized protein conserved in bacteria (DUF2325), at 1,741,756 to 1,743,075
_1659
Dsui_1660: Dsui_1660 - outer membrane cobalamin receptor protein, at 1,743,236 to 1,745,314
_1660
Dsui_1661: Dsui_1661 - hypothetical protein, at 1,745,314 to 1,745,790
_1661
Dsui_1662: Dsui_1662 - Oxidoreductase NAD-binding domain/Flavodoxin, at 1,745,910 to 1,747,262
_1662
Position (kb)
1743
1744
1745
1746 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1742.269 kb on - strand, within Dsui_1659 at 1742.283 kb on - strand at 1742.295 kb on + strand, within Dsui_1659 at 1742.324 kb on - strand at 1742.337 kb on - strand at 1742.343 kb on + strand, within Dsui_1659 at 1742.926 kb on + strand, within Dsui_1659 at 1742.970 kb on + strand at 1743.002 kb on - strand at 1743.376 kb on + strand at 1743.381 kb on + strand at 1743.393 kb on + strand at 1743.408 kb on - strand at 1743.555 kb on - strand at 1743.642 kb on + strand at 1743.678 kb on - strand at 1743.703 kb on + strand, within Dsui_1660 at 1743.757 kb on + strand, within Dsui_1660 at 1743.820 kb on + strand, within Dsui_1660 at 1744.122 kb on + strand, within Dsui_1660 at 1744.132 kb on + strand, within Dsui_1660 at 1744.358 kb on - strand, within Dsui_1660 at 1744.417 kb on + strand, within Dsui_1660 at 1744.490 kb on + strand, within Dsui_1660 at 1744.498 kb on - strand, within Dsui_1660 at 1744.526 kb on + strand at 1744.606 kb on + strand, within Dsui_1660 at 1744.766 kb on - strand, within Dsui_1660 at 1745.037 kb on + strand, within Dsui_1660 at 1745.173 kb on - strand at 1745.213 kb on + strand at 1745.327 kb on + strand at 1745.335 kb on - strand at 1745.346 kb on - strand at 1745.377 kb on + strand, within Dsui_1661 at 1745.481 kb on - strand at 1745.493 kb on - strand, within Dsui_1661 at 1745.532 kb on + strand, within Dsui_1661 at 1745.563 kb on - strand, within Dsui_1661 at 1745.574 kb on + strand, within Dsui_1661 at 1745.574 kb on - strand, within Dsui_1661 at 1745.594 kb on + strand, within Dsui_1661 at 1745.599 kb on + strand at 1745.602 kb on - strand at 1745.641 kb on - strand, within Dsui_1661 at 1745.829 kb on - strand at 1745.829 kb on - strand at 1745.839 kb on + strand at 1745.909 kb on - strand at 1745.952 kb on + strand at 1745.960 kb on - strand at 1745.986 kb on - strand at 1746.057 kb on + strand, within Dsui_1662 at 1746.088 kb on - strand, within Dsui_1662 at 1746.134 kb on + strand, within Dsui_1662 at 1746.267 kb on - strand, within Dsui_1662 at 1746.271 kb on + strand, within Dsui_1662 at 1746.308 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,742,269 - Dsui_1659 0.39 -1.9 1,742,283 - -1.2 1,742,295 + Dsui_1659 0.41 -1.2 1,742,324 - -1.2 1,742,337 - +0.4 1,742,343 + Dsui_1659 0.44 -1.2 1,742,926 + Dsui_1659 0.89 +0.4 1,742,970 + -1.2 1,743,002 - +0.4 1,743,376 + -1.9 1,743,381 + -1.2 1,743,393 + -1.9 1,743,408 - -3.3 1,743,555 - -0.6 1,743,642 + +0.4 1,743,678 - +0.4 1,743,703 + Dsui_1660 0.22 -2.2 1,743,757 + Dsui_1660 0.25 -1.6 1,743,820 + Dsui_1660 0.28 -0.6 1,744,122 + Dsui_1660 0.43 -0.6 1,744,132 + Dsui_1660 0.43 +0.4 1,744,358 - Dsui_1660 0.54 -0.6 1,744,417 + Dsui_1660 0.57 -1.6 1,744,490 + Dsui_1660 0.60 -1.2 1,744,498 - Dsui_1660 0.61 -2.4 1,744,526 + -1.2 1,744,606 + Dsui_1660 0.66 -2.2 1,744,766 - Dsui_1660 0.74 +0.4 1,745,037 + Dsui_1660 0.87 -1.9 1,745,173 - -1.6 1,745,213 + -1.9 1,745,327 + -1.2 1,745,335 - -1.2 1,745,346 - +0.4 1,745,377 + Dsui_1661 0.13 +0.4 1,745,481 - +0.4 1,745,493 - Dsui_1661 0.38 -2.4 1,745,532 + Dsui_1661 0.46 +0.4 1,745,563 - Dsui_1661 0.52 -2.6 1,745,574 + Dsui_1661 0.55 -0.6 1,745,574 - Dsui_1661 0.55 +0.4 1,745,594 + Dsui_1661 0.59 +0.4 1,745,599 + -1.2 1,745,602 - +0.4 1,745,641 - Dsui_1661 0.69 -0.6 1,745,829 - -1.0 1,745,829 - +0.6 1,745,839 + -0.6 1,745,909 - -0.8 1,745,952 + -1.6 1,745,960 - -0.6 1,745,986 - -0.5 1,746,057 + Dsui_1662 0.11 +0.4 1,746,088 - Dsui_1662 0.13 -0.3 1,746,134 + Dsui_1662 0.17 +0.4 1,746,267 - Dsui_1662 0.26 -0.6 1,746,271 + Dsui_1662 0.27 +0.4 1,746,308 + -1.2
Or see this region's nucleotide sequence