Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1619 and Dsui_1620 are separated by 2 nucleotides Dsui_1620 and Dsui_1621 are separated by 146 nucleotides Dsui_1621 and Dsui_1622 are separated by 10 nucleotides
Dsui_1619: Dsui_1619 - putative membrane-associated, metal-dependent hydrolase, at 1,700,893 to 1,702,644
_1619
Dsui_1620: Dsui_1620 - PAP2 (acid phosphatase) superfamily protein, at 1,702,647 to 1,703,414
_1620
Dsui_1621: Dsui_1621 - diacylglycerol kinase, at 1,703,561 to 1,703,932
_1621
Dsui_1622: Dsui_1622 - excinuclease ABC, A subunit, at 1,703,943 to 1,706,762
_1622
Position (kb)
1702
1703
1704 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1701.871 kb on + strand, within Dsui_1619 at 1701.921 kb on - strand, within Dsui_1619 at 1702.021 kb on + strand, within Dsui_1619 at 1702.049 kb on + strand, within Dsui_1619 at 1702.049 kb on + strand, within Dsui_1619 at 1702.057 kb on - strand at 1702.122 kb on + strand at 1702.136 kb on - strand, within Dsui_1619 at 1702.250 kb on + strand at 1702.258 kb on - strand, within Dsui_1619 at 1702.287 kb on + strand at 1702.287 kb on + strand at 1702.287 kb on + strand, within Dsui_1619 at 1702.287 kb on + strand at 1702.295 kb on - strand, within Dsui_1619 at 1702.295 kb on - strand, within Dsui_1619 at 1702.370 kb on + strand at 1702.431 kb on - strand at 1702.503 kb on + strand at 1702.625 kb on - strand at 1702.793 kb on + strand at 1703.128 kb on - strand, within Dsui_1620 at 1703.177 kb on + strand, within Dsui_1620 at 1703.220 kb on + strand, within Dsui_1620 at 1703.226 kb on + strand, within Dsui_1620 at 1703.338 kb on + strand at 1703.362 kb on + strand at 1703.416 kb on - strand at 1703.634 kb on + strand, within Dsui_1621 at 1703.661 kb on - strand, within Dsui_1621 at 1703.851 kb on + strand at 1703.957 kb on - strand at 1703.992 kb on + strand at 1704.092 kb on + strand at 1704.092 kb on + strand at 1704.116 kb on + strand at 1704.121 kb on + strand at 1704.193 kb on - strand at 1704.242 kb on + strand, within Dsui_1622 at 1704.242 kb on + strand, within Dsui_1622 at 1704.299 kb on + strand, within Dsui_1622 at 1704.299 kb on + strand, within Dsui_1622 at 1704.313 kb on - strand, within Dsui_1622 at 1704.389 kb on + strand, within Dsui_1622 at 1704.392 kb on - strand, within Dsui_1622
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,701,871 + Dsui_1619 0.56 +0.4 1,701,921 - Dsui_1619 0.59 -1.6 1,702,021 + Dsui_1619 0.64 -2.9 1,702,049 + Dsui_1619 0.66 -2.6 1,702,049 + Dsui_1619 0.66 -1.6 1,702,057 - +0.4 1,702,122 + +0.4 1,702,136 - Dsui_1619 0.71 -3.2 1,702,250 + +0.4 1,702,258 - Dsui_1619 0.78 +0.4 1,702,287 + -0.6 1,702,287 + -0.6 1,702,287 + Dsui_1619 0.80 -1.6 1,702,287 + +0.4 1,702,295 - Dsui_1619 0.80 -0.6 1,702,295 - Dsui_1619 0.80 -1.2 1,702,370 + +0.4 1,702,431 - +0.4 1,702,503 + +0.4 1,702,625 - +0.4 1,702,793 + +0.4 1,703,128 - Dsui_1620 0.63 -1.2 1,703,177 + Dsui_1620 0.69 -1.9 1,703,220 + Dsui_1620 0.75 -2.2 1,703,226 + Dsui_1620 0.75 -0.6 1,703,338 + +0.4 1,703,362 + +0.4 1,703,416 - -1.6 1,703,634 + Dsui_1621 0.20 +0.4 1,703,661 - Dsui_1621 0.27 -0.3 1,703,851 + +0.4 1,703,957 - -0.2 1,703,992 + +0.4 1,704,092 + +0.4 1,704,092 + +0.4 1,704,116 + -1.2 1,704,121 + -1.6 1,704,193 - -0.7 1,704,242 + Dsui_1622 0.11 -1.2 1,704,242 + Dsui_1622 0.11 -1.2 1,704,299 + Dsui_1622 0.13 -0.6 1,704,299 + Dsui_1622 0.13 +0.4 1,704,313 - Dsui_1622 0.13 -0.7 1,704,389 + Dsui_1622 0.16 +0.4 1,704,392 - Dsui_1622 0.16 -0.8
Or see this region's nucleotide sequence