Strain Fitness in Dechlorosoma suillum PS around Dsui_1619

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1618 and Dsui_1619 are separated by 176 nucleotidesDsui_1619 and Dsui_1620 are separated by 2 nucleotidesDsui_1620 and Dsui_1621 are separated by 146 nucleotides Dsui_1618: Dsui_1618 - signal transduction histidine kinase, at 1,699,448 to 1,700,716 _1618 Dsui_1619: Dsui_1619 - putative membrane-associated, metal-dependent hydrolase, at 1,700,893 to 1,702,644 _1619 Dsui_1620: Dsui_1620 - PAP2 (acid phosphatase) superfamily protein, at 1,702,647 to 1,703,414 _1620 Dsui_1621: Dsui_1621 - diacylglycerol kinase, at 1,703,561 to 1,703,932 _1621 Position (kb) 1700 1701 1702 1703Strain fitness (log2 ratio) -3 -2 -1 0 1at 1699.893 kb on - strandat 1699.929 kb on - strandat 1699.971 kb on - strandat 1699.991 kb on - strand, within Dsui_1618at 1700.048 kb on + strand, within Dsui_1618at 1700.095 kb on + strand, within Dsui_1618at 1700.328 kb on - strandat 1700.354 kb on - strandat 1700.374 kb on - strand, within Dsui_1618at 1700.439 kb on - strand, within Dsui_1618at 1700.582 kb on - strandat 1700.837 kb on - strandat 1700.972 kb on - strandat 1700.981 kb on - strandat 1701.062 kb on + strandat 1701.070 kb on - strandat 1701.322 kb on - strandat 1701.322 kb on - strandat 1701.350 kb on - strandat 1701.871 kb on + strand, within Dsui_1619at 1701.921 kb on - strand, within Dsui_1619at 1702.021 kb on + strand, within Dsui_1619at 1702.049 kb on + strand, within Dsui_1619at 1702.049 kb on + strand, within Dsui_1619at 1702.057 kb on - strandat 1702.122 kb on + strandat 1702.136 kb on - strand, within Dsui_1619at 1702.250 kb on + strandat 1702.258 kb on - strand, within Dsui_1619at 1702.287 kb on + strandat 1702.287 kb on + strandat 1702.287 kb on + strand, within Dsui_1619at 1702.287 kb on + strandat 1702.295 kb on - strand, within Dsui_1619at 1702.295 kb on - strand, within Dsui_1619at 1702.370 kb on + strandat 1702.431 kb on - strandat 1702.503 kb on + strandat 1702.625 kb on - strandat 1702.793 kb on + strandat 1703.128 kb on - strand, within Dsui_1620at 1703.177 kb on + strand, within Dsui_1620at 1703.220 kb on + strand, within Dsui_1620at 1703.226 kb on + strand, within Dsui_1620at 1703.338 kb on + strandat 1703.362 kb on + strandat 1703.416 kb on - strandat 1703.634 kb on + strand, within Dsui_1621

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,699,893 - +0.4
1,699,929 - -1.6
1,699,971 - +0.4
1,699,991 - Dsui_1618 0.43 -1.9
1,700,048 + Dsui_1618 0.47 -1.9
1,700,095 + Dsui_1618 0.51 -1.2
1,700,328 - -0.6
1,700,354 - +0.4
1,700,374 - Dsui_1618 0.73 -2.2
1,700,439 - Dsui_1618 0.78 -0.6
1,700,582 - -1.2
1,700,837 - +0.4
1,700,972 - -0.6
1,700,981 - -2.2
1,701,062 + -3.3
1,701,070 - -1.2
1,701,322 - +0.4
1,701,322 - +0.4
1,701,350 - +0.4
1,701,871 + Dsui_1619 0.56 +0.4
1,701,921 - Dsui_1619 0.59 -1.6
1,702,021 + Dsui_1619 0.64 -2.9
1,702,049 + Dsui_1619 0.66 -2.6
1,702,049 + Dsui_1619 0.66 -1.6
1,702,057 - +0.4
1,702,122 + +0.4
1,702,136 - Dsui_1619 0.71 -3.2
1,702,250 + +0.4
1,702,258 - Dsui_1619 0.78 +0.4
1,702,287 + -0.6
1,702,287 + -0.6
1,702,287 + Dsui_1619 0.80 -1.6
1,702,287 + +0.4
1,702,295 - Dsui_1619 0.80 -0.6
1,702,295 - Dsui_1619 0.80 -1.2
1,702,370 + +0.4
1,702,431 - +0.4
1,702,503 + +0.4
1,702,625 - +0.4
1,702,793 + +0.4
1,703,128 - Dsui_1620 0.63 -1.2
1,703,177 + Dsui_1620 0.69 -1.9
1,703,220 + Dsui_1620 0.75 -2.2
1,703,226 + Dsui_1620 0.75 -0.6
1,703,338 + +0.4
1,703,362 + +0.4
1,703,416 - -1.6
1,703,634 + Dsui_1621 0.20 +0.4

Or see this region's nucleotide sequence