Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1618 and Dsui_1619 are separated by 176 nucleotides Dsui_1619 and Dsui_1620 are separated by 2 nucleotides Dsui_1620 and Dsui_1621 are separated by 146 nucleotides
Dsui_1618: Dsui_1618 - signal transduction histidine kinase, at 1,699,448 to 1,700,716
_1618
Dsui_1619: Dsui_1619 - putative membrane-associated, metal-dependent hydrolase, at 1,700,893 to 1,702,644
_1619
Dsui_1620: Dsui_1620 - PAP2 (acid phosphatase) superfamily protein, at 1,702,647 to 1,703,414
_1620
Dsui_1621: Dsui_1621 - diacylglycerol kinase, at 1,703,561 to 1,703,932
_1621
Position (kb)
1700
1701
1702
1703 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1699.893 kb on - strand at 1699.929 kb on - strand at 1699.971 kb on - strand at 1699.991 kb on - strand, within Dsui_1618 at 1700.048 kb on + strand, within Dsui_1618 at 1700.095 kb on + strand, within Dsui_1618 at 1700.328 kb on - strand at 1700.354 kb on - strand at 1700.374 kb on - strand, within Dsui_1618 at 1700.439 kb on - strand, within Dsui_1618 at 1700.582 kb on - strand at 1700.837 kb on - strand at 1700.972 kb on - strand at 1700.981 kb on - strand at 1701.062 kb on + strand at 1701.070 kb on - strand at 1701.322 kb on - strand at 1701.322 kb on - strand at 1701.350 kb on - strand at 1701.871 kb on + strand, within Dsui_1619 at 1701.921 kb on - strand, within Dsui_1619 at 1702.021 kb on + strand, within Dsui_1619 at 1702.049 kb on + strand, within Dsui_1619 at 1702.049 kb on + strand, within Dsui_1619 at 1702.057 kb on - strand at 1702.122 kb on + strand at 1702.136 kb on - strand, within Dsui_1619 at 1702.250 kb on + strand at 1702.258 kb on - strand, within Dsui_1619 at 1702.287 kb on + strand at 1702.287 kb on + strand at 1702.287 kb on + strand, within Dsui_1619 at 1702.287 kb on + strand at 1702.295 kb on - strand, within Dsui_1619 at 1702.295 kb on - strand, within Dsui_1619 at 1702.370 kb on + strand at 1702.431 kb on - strand at 1702.503 kb on + strand at 1702.625 kb on - strand at 1702.793 kb on + strand at 1703.128 kb on - strand, within Dsui_1620 at 1703.177 kb on + strand, within Dsui_1620 at 1703.220 kb on + strand, within Dsui_1620 at 1703.226 kb on + strand, within Dsui_1620 at 1703.338 kb on + strand at 1703.362 kb on + strand at 1703.416 kb on - strand at 1703.634 kb on + strand, within Dsui_1621
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,699,893 - +0.4 1,699,929 - -1.6 1,699,971 - +0.4 1,699,991 - Dsui_1618 0.43 -1.9 1,700,048 + Dsui_1618 0.47 -1.9 1,700,095 + Dsui_1618 0.51 -1.2 1,700,328 - -0.6 1,700,354 - +0.4 1,700,374 - Dsui_1618 0.73 -2.2 1,700,439 - Dsui_1618 0.78 -0.6 1,700,582 - -1.2 1,700,837 - +0.4 1,700,972 - -0.6 1,700,981 - -2.2 1,701,062 + -3.3 1,701,070 - -1.2 1,701,322 - +0.4 1,701,322 - +0.4 1,701,350 - +0.4 1,701,871 + Dsui_1619 0.56 +0.4 1,701,921 - Dsui_1619 0.59 -1.6 1,702,021 + Dsui_1619 0.64 -2.9 1,702,049 + Dsui_1619 0.66 -2.6 1,702,049 + Dsui_1619 0.66 -1.6 1,702,057 - +0.4 1,702,122 + +0.4 1,702,136 - Dsui_1619 0.71 -3.2 1,702,250 + +0.4 1,702,258 - Dsui_1619 0.78 +0.4 1,702,287 + -0.6 1,702,287 + -0.6 1,702,287 + Dsui_1619 0.80 -1.6 1,702,287 + +0.4 1,702,295 - Dsui_1619 0.80 -0.6 1,702,295 - Dsui_1619 0.80 -1.2 1,702,370 + +0.4 1,702,431 - +0.4 1,702,503 + +0.4 1,702,625 - +0.4 1,702,793 + +0.4 1,703,128 - Dsui_1620 0.63 -1.2 1,703,177 + Dsui_1620 0.69 -1.9 1,703,220 + Dsui_1620 0.75 -2.2 1,703,226 + Dsui_1620 0.75 -0.6 1,703,338 + +0.4 1,703,362 + +0.4 1,703,416 - -1.6 1,703,634 + Dsui_1621 0.20 +0.4
Or see this region's nucleotide sequence