Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1597 and Dsui_1598 are separated by 174 nucleotides Dsui_1598 and Dsui_1599 are separated by 110 nucleotides Dsui_1599 and Dsui_1600 overlap by 4 nucleotides
Dsui_1597: Dsui_1597 - coproporphyrinogen III oxidase, at 1,678,199 to 1,679,107
_1597
Dsui_1598: Dsui_1598 - hypothetical protein, at 1,679,282 to 1,679,521
_1598
Dsui_1599: Dsui_1599 - putative enzyme of heme biosynthesis, at 1,679,632 to 1,680,834
_1599
Dsui_1600: Dsui_1600 - putative enzyme of heme biosynthesis, at 1,680,831 to 1,681,916
_1600
Position (kb)
1679
1680
1681 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1679.200 kb on - strand at 1679.305 kb on + strand at 1679.305 kb on + strand at 1679.305 kb on + strand at 1679.312 kb on - strand, within Dsui_1598 at 1679.312 kb on - strand, within Dsui_1598 at 1679.422 kb on - strand, within Dsui_1598 at 1679.422 kb on - strand, within Dsui_1598 at 1679.506 kb on + strand at 1679.514 kb on - strand at 1679.514 kb on - strand at 1679.519 kb on - strand at 1679.538 kb on - strand at 1679.748 kb on - strand at 1679.781 kb on - strand, within Dsui_1599 at 1680.002 kb on + strand, within Dsui_1599 at 1680.010 kb on - strand, within Dsui_1599 at 1680.102 kb on + strand, within Dsui_1599 at 1680.251 kb on + strand, within Dsui_1599 at 1680.366 kb on + strand, within Dsui_1599 at 1680.389 kb on - strand, within Dsui_1599 at 1680.394 kb on + strand, within Dsui_1599 at 1680.584 kb on + strand, within Dsui_1599 at 1680.592 kb on - strand, within Dsui_1599 at 1680.769 kb on - strand at 1680.849 kb on - strand at 1680.851 kb on + strand at 1680.859 kb on - strand at 1680.861 kb on + strand at 1680.868 kb on + strand at 1681.078 kb on - strand, within Dsui_1600 at 1681.090 kb on + strand, within Dsui_1600 at 1681.113 kb on - strand, within Dsui_1600 at 1681.131 kb on + strand at 1681.189 kb on - strand, within Dsui_1600 at 1681.386 kb on - strand, within Dsui_1600 at 1681.471 kb on + strand, within Dsui_1600 at 1681.504 kb on - strand, within Dsui_1600 at 1681.504 kb on - strand, within Dsui_1600 at 1681.513 kb on + strand at 1681.518 kb on + strand at 1681.656 kb on - strand, within Dsui_1600 at 1681.783 kb on - strand, within Dsui_1600
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,679,200 - -0.6 1,679,305 + +0.4 1,679,305 + -0.2 1,679,305 + -2.8 1,679,312 - Dsui_1598 0.12 -0.1 1,679,312 - Dsui_1598 0.12 -0.1 1,679,422 - Dsui_1598 0.58 -0.1 1,679,422 - Dsui_1598 0.58 +0.1 1,679,506 + -1.6 1,679,514 - -0.2 1,679,514 - -0.2 1,679,519 - +0.3 1,679,538 - -0.1 1,679,748 - -1.6 1,679,781 - Dsui_1599 0.12 -2.7 1,680,002 + Dsui_1599 0.31 -2.2 1,680,010 - Dsui_1599 0.31 -4.1 1,680,102 + Dsui_1599 0.39 -1.2 1,680,251 + Dsui_1599 0.51 -0.6 1,680,366 + Dsui_1599 0.61 -1.6 1,680,389 - Dsui_1599 0.63 -3.4 1,680,394 + Dsui_1599 0.63 -1.2 1,680,584 + Dsui_1599 0.79 -1.6 1,680,592 - Dsui_1599 0.80 -3.4 1,680,769 - -2.9 1,680,849 - -1.8 1,680,851 + -2.2 1,680,859 - -2.0 1,680,861 + -1.6 1,680,868 + -0.6 1,681,078 - Dsui_1600 0.23 -3.3 1,681,090 + Dsui_1600 0.24 +0.4 1,681,113 - Dsui_1600 0.26 -2.6 1,681,131 + +0.4 1,681,189 - Dsui_1600 0.33 -4.5 1,681,386 - Dsui_1600 0.51 -2.6 1,681,471 + Dsui_1600 0.59 -0.6 1,681,504 - Dsui_1600 0.62 -3.1 1,681,504 - Dsui_1600 0.62 -3.1 1,681,513 + +0.4 1,681,518 + +0.4 1,681,656 - Dsui_1600 0.76 -3.8 1,681,783 - Dsui_1600 0.88 -4.3
Or see this region's nucleotide sequence