Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1549 and Dsui_1550 are separated by 7 nucleotides Dsui_1550 and Dsui_1551 are separated by 156 nucleotides
Dsui_1549: Dsui_1549 - PAS domain S-box, at 1,608,506 to 1,611,505
_1549
Dsui_1550: Dsui_1550 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,611,513 to 1,613,231
_1550
Dsui_1551: Dsui_1551 - DNA mismatch repair protein MutL, at 1,613,388 to 1,615,244
_1551
Position (kb)
1611
1612
1613
1614 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1610.734 kb on + strand, within Dsui_1549 at 1610.750 kb on + strand, within Dsui_1549 at 1610.752 kb on + strand at 1610.792 kb on + strand at 1610.838 kb on - strand, within Dsui_1549 at 1611.012 kb on + strand, within Dsui_1549 at 1611.022 kb on + strand, within Dsui_1549 at 1611.030 kb on - strand at 1611.087 kb on + strand at 1611.095 kb on - strand, within Dsui_1549 at 1611.128 kb on + strand at 1611.149 kb on - strand, within Dsui_1549 at 1611.372 kb on - strand at 1611.538 kb on - strand at 1611.620 kb on + strand at 1611.665 kb on - strand at 1611.850 kb on - strand, within Dsui_1550 at 1611.852 kb on + strand at 1611.860 kb on - strand, within Dsui_1550 at 1611.860 kb on - strand, within Dsui_1550 at 1611.990 kb on + strand, within Dsui_1550 at 1612.059 kb on + strand, within Dsui_1550 at 1612.199 kb on + strand, within Dsui_1550 at 1612.207 kb on - strand at 1612.218 kb on + strand at 1612.247 kb on - strand, within Dsui_1550 at 1612.301 kb on - strand, within Dsui_1550 at 1612.325 kb on - strand, within Dsui_1550 at 1612.385 kb on - strand, within Dsui_1550 at 1612.456 kb on - strand, within Dsui_1550 at 1612.457 kb on - strand, within Dsui_1550 at 1612.550 kb on - strand, within Dsui_1550 at 1612.569 kb on - strand, within Dsui_1550 at 1612.574 kb on - strand, within Dsui_1550 at 1612.817 kb on - strand, within Dsui_1550 at 1613.057 kb on + strand at 1613.197 kb on + strand at 1613.210 kb on - strand at 1613.235 kb on - strand at 1613.293 kb on - strand at 1613.465 kb on + strand at 1613.632 kb on + strand, within Dsui_1551 at 1613.972 kb on - strand at 1614.004 kb on + strand, within Dsui_1551 at 1614.101 kb on + strand, within Dsui_1551
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,610,734 + Dsui_1549 0.74 -1.6 1,610,750 + Dsui_1549 0.75 +0.4 1,610,752 + +0.4 1,610,792 + +0.4 1,610,838 - Dsui_1549 0.78 -0.6 1,611,012 + Dsui_1549 0.84 -1.6 1,611,022 + Dsui_1549 0.84 -1.2 1,611,030 - +0.4 1,611,087 + -0.6 1,611,095 - Dsui_1549 0.86 +0.4 1,611,128 + +0.4 1,611,149 - Dsui_1549 0.88 -1.6 1,611,372 - -1.2 1,611,538 - -1.9 1,611,620 + +0.4 1,611,665 - -0.6 1,611,850 - Dsui_1550 0.20 -3.6 1,611,852 + +0.4 1,611,860 - Dsui_1550 0.20 -1.2 1,611,860 - Dsui_1550 0.20 +0.4 1,611,990 + Dsui_1550 0.28 -1.2 1,612,059 + Dsui_1550 0.32 -1.6 1,612,199 + Dsui_1550 0.40 -1.2 1,612,207 - +0.4 1,612,218 + +0.4 1,612,247 - Dsui_1550 0.43 -1.2 1,612,301 - Dsui_1550 0.46 -1.6 1,612,325 - Dsui_1550 0.47 -0.6 1,612,385 - Dsui_1550 0.51 +0.4 1,612,456 - Dsui_1550 0.55 -0.6 1,612,457 - Dsui_1550 0.55 -1.6 1,612,550 - Dsui_1550 0.60 +1.0 1,612,569 - Dsui_1550 0.61 +2.0 1,612,574 - Dsui_1550 0.62 -0.1 1,612,817 - Dsui_1550 0.76 -1.2 1,613,057 + +0.4 1,613,197 + -1.6 1,613,210 - -0.3 1,613,235 - -0.1 1,613,293 - +0.4 1,613,465 + -0.1 1,613,632 + Dsui_1551 0.13 -1.4 1,613,972 - +0.4 1,614,004 + Dsui_1551 0.33 -0.3 1,614,101 + Dsui_1551 0.38 -0.1
Or see this region's nucleotide sequence