Strain Fitness in Dechlorosoma suillum PS around Dsui_1550

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1549 and Dsui_1550 are separated by 7 nucleotidesDsui_1550 and Dsui_1551 are separated by 156 nucleotides Dsui_1549: Dsui_1549 - PAS domain S-box, at 1,608,506 to 1,611,505 _1549 Dsui_1550: Dsui_1550 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,611,513 to 1,613,231 _1550 Dsui_1551: Dsui_1551 - DNA mismatch repair protein MutL, at 1,613,388 to 1,615,244 _1551 Position (kb) 1611 1612 1613 1614Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1610.734 kb on + strand, within Dsui_1549at 1610.750 kb on + strand, within Dsui_1549at 1610.752 kb on + strandat 1610.792 kb on + strandat 1610.838 kb on - strand, within Dsui_1549at 1611.012 kb on + strand, within Dsui_1549at 1611.022 kb on + strand, within Dsui_1549at 1611.030 kb on - strandat 1611.087 kb on + strandat 1611.095 kb on - strand, within Dsui_1549at 1611.128 kb on + strandat 1611.149 kb on - strand, within Dsui_1549at 1611.372 kb on - strandat 1611.538 kb on - strandat 1611.620 kb on + strandat 1611.665 kb on - strandat 1611.850 kb on - strand, within Dsui_1550at 1611.852 kb on + strandat 1611.860 kb on - strand, within Dsui_1550at 1611.860 kb on - strand, within Dsui_1550at 1611.990 kb on + strand, within Dsui_1550at 1612.059 kb on + strand, within Dsui_1550at 1612.199 kb on + strand, within Dsui_1550at 1612.207 kb on - strandat 1612.218 kb on + strandat 1612.247 kb on - strand, within Dsui_1550at 1612.301 kb on - strand, within Dsui_1550at 1612.325 kb on - strand, within Dsui_1550at 1612.385 kb on - strand, within Dsui_1550at 1612.456 kb on - strand, within Dsui_1550at 1612.457 kb on - strand, within Dsui_1550at 1612.550 kb on - strand, within Dsui_1550at 1612.569 kb on - strand, within Dsui_1550at 1612.574 kb on - strand, within Dsui_1550at 1612.817 kb on - strand, within Dsui_1550at 1613.057 kb on + strandat 1613.197 kb on + strandat 1613.210 kb on - strandat 1613.235 kb on - strandat 1613.293 kb on - strandat 1613.465 kb on + strandat 1613.632 kb on + strand, within Dsui_1551at 1613.972 kb on - strandat 1614.004 kb on + strand, within Dsui_1551at 1614.101 kb on + strand, within Dsui_1551

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,610,734 + Dsui_1549 0.74 -1.6
1,610,750 + Dsui_1549 0.75 +0.4
1,610,752 + +0.4
1,610,792 + +0.4
1,610,838 - Dsui_1549 0.78 -0.6
1,611,012 + Dsui_1549 0.84 -1.6
1,611,022 + Dsui_1549 0.84 -1.2
1,611,030 - +0.4
1,611,087 + -0.6
1,611,095 - Dsui_1549 0.86 +0.4
1,611,128 + +0.4
1,611,149 - Dsui_1549 0.88 -1.6
1,611,372 - -1.2
1,611,538 - -1.9
1,611,620 + +0.4
1,611,665 - -0.6
1,611,850 - Dsui_1550 0.20 -3.6
1,611,852 + +0.4
1,611,860 - Dsui_1550 0.20 -1.2
1,611,860 - Dsui_1550 0.20 +0.4
1,611,990 + Dsui_1550 0.28 -1.2
1,612,059 + Dsui_1550 0.32 -1.6
1,612,199 + Dsui_1550 0.40 -1.2
1,612,207 - +0.4
1,612,218 + +0.4
1,612,247 - Dsui_1550 0.43 -1.2
1,612,301 - Dsui_1550 0.46 -1.6
1,612,325 - Dsui_1550 0.47 -0.6
1,612,385 - Dsui_1550 0.51 +0.4
1,612,456 - Dsui_1550 0.55 -0.6
1,612,457 - Dsui_1550 0.55 -1.6
1,612,550 - Dsui_1550 0.60 +1.0
1,612,569 - Dsui_1550 0.61 +2.0
1,612,574 - Dsui_1550 0.62 -0.1
1,612,817 - Dsui_1550 0.76 -1.2
1,613,057 + +0.4
1,613,197 + -1.6
1,613,210 - -0.3
1,613,235 - -0.1
1,613,293 - +0.4
1,613,465 + -0.1
1,613,632 + Dsui_1551 0.13 -1.4
1,613,972 - +0.4
1,614,004 + Dsui_1551 0.33 -0.3
1,614,101 + Dsui_1551 0.38 -0.1

Or see this region's nucleotide sequence