Strain Fitness in Dechlorosoma suillum PS around Dsui_1492

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1490 and Dsui_1491 are separated by 32 nucleotidesDsui_1491 and Dsui_1492 are separated by 95 nucleotidesDsui_1492 and Dsui_1493 are separated by 16 nucleotides Dsui_1490: Dsui_1490 - DNA-binding protein, excisionase family, at 1,552,611 to 1,552,883 _1490 Dsui_1491: Dsui_1491 - molecular chaperone (small heat shock protein), at 1,552,916 to 1,553,485 _1491 Dsui_1492: Dsui_1492 - ATPase with chaperone activity, ATP-binding subunit, at 1,553,581 to 1,556,430 _1492 Dsui_1493: Dsui_1493 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,556,447 to 1,557,877 _1493 Position (kb) 1553 1554 1555 1556 1557Strain fitness (log2 ratio) -3 -2 -1 0 1at 1552.693 kb on - strand, within Dsui_1490at 1552.703 kb on - strand, within Dsui_1490at 1552.781 kb on + strand, within Dsui_1490at 1552.791 kb on + strand, within Dsui_1490at 1552.803 kb on - strand, within Dsui_1490at 1552.971 kb on + strandat 1552.973 kb on + strand, within Dsui_1491at 1552.979 kb on - strand, within Dsui_1491at 1552.997 kb on - strand, within Dsui_1491at 1553.048 kb on - strand, within Dsui_1491at 1553.191 kb on - strand, within Dsui_1491at 1553.209 kb on + strand, within Dsui_1491at 1553.252 kb on + strand, within Dsui_1491at 1553.309 kb on + strand, within Dsui_1491at 1553.351 kb on + strand, within Dsui_1491at 1553.394 kb on - strand, within Dsui_1491at 1553.404 kb on - strand, within Dsui_1491at 1553.418 kb on + strand, within Dsui_1491at 1553.530 kb on - strandat 1553.540 kb on - strandat 1553.655 kb on - strandat 1554.068 kb on + strand, within Dsui_1492at 1554.112 kb on - strand, within Dsui_1492at 1554.162 kb on - strand, within Dsui_1492at 1554.187 kb on - strand, within Dsui_1492at 1554.404 kb on - strand, within Dsui_1492at 1554.455 kb on - strand, within Dsui_1492at 1554.704 kb on - strand, within Dsui_1492at 1554.704 kb on - strand, within Dsui_1492at 1554.738 kb on - strand, within Dsui_1492at 1554.738 kb on - strand, within Dsui_1492at 1554.973 kb on - strandat 1555.058 kb on - strand, within Dsui_1492at 1555.184 kb on - strand, within Dsui_1492at 1555.305 kb on + strand, within Dsui_1492at 1555.324 kb on + strand, within Dsui_1492at 1555.434 kb on + strand, within Dsui_1492at 1555.437 kb on - strand, within Dsui_1492at 1555.537 kb on + strand, within Dsui_1492at 1555.572 kb on - strand, within Dsui_1492at 1555.663 kb on + strand, within Dsui_1492at 1555.663 kb on + strand, within Dsui_1492at 1555.663 kb on + strand, within Dsui_1492at 1555.766 kb on - strand, within Dsui_1492at 1555.779 kb on - strand, within Dsui_1492at 1555.943 kb on + strand, within Dsui_1492at 1555.951 kb on - strand, within Dsui_1492at 1556.112 kb on - strand, within Dsui_1492at 1556.210 kb on - strandat 1556.259 kb on + strandat 1556.379 kb on - strandat 1556.448 kb on + strandat 1556.514 kb on - strandat 1556.558 kb on - strandat 1556.820 kb on - strand, within Dsui_1493at 1556.825 kb on - strand, within Dsui_1493at 1556.878 kb on + strand, within Dsui_1493at 1556.977 kb on - strand, within Dsui_1493at 1557.229 kb on + strand, within Dsui_1493at 1557.233 kb on + strand, within Dsui_1493

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,552,693 - Dsui_1490 0.30 -2.3
1,552,703 - Dsui_1490 0.34 -1.1
1,552,781 + Dsui_1490 0.62 -2.1
1,552,791 + Dsui_1490 0.66 -3.1
1,552,803 - Dsui_1490 0.70 -1.1
1,552,971 + -1.5
1,552,973 + Dsui_1491 0.10 +0.5
1,552,979 - Dsui_1491 0.11 +0.5
1,552,997 - Dsui_1491 0.14 -1.5
1,553,048 - Dsui_1491 0.23 +0.5
1,553,191 - Dsui_1491 0.48 -2.9
1,553,209 + Dsui_1491 0.51 -0.5
1,553,252 + Dsui_1491 0.59 -2.1
1,553,309 + Dsui_1491 0.69 -1.1
1,553,351 + Dsui_1491 0.76 -0.3
1,553,394 - Dsui_1491 0.84 -1.1
1,553,404 - Dsui_1491 0.86 -3.4
1,553,418 + Dsui_1491 0.88 -0.1
1,553,530 - -1.1
1,553,540 - -1.1
1,553,655 - +0.5
1,554,068 + Dsui_1492 0.17 -1.6
1,554,112 - Dsui_1492 0.19 -0.5
1,554,162 - Dsui_1492 0.20 -1.5
1,554,187 - Dsui_1492 0.21 -0.5
1,554,404 - Dsui_1492 0.29 +0.5
1,554,455 - Dsui_1492 0.31 -1.5
1,554,704 - Dsui_1492 0.39 -0.5
1,554,704 - Dsui_1492 0.39 -1.8
1,554,738 - Dsui_1492 0.41 -1.8
1,554,738 - Dsui_1492 0.41 -0.5
1,554,973 - +0.5
1,555,058 - Dsui_1492 0.52 +0.5
1,555,184 - Dsui_1492 0.56 -1.5
1,555,305 + Dsui_1492 0.60 +0.5
1,555,324 + Dsui_1492 0.61 +0.5
1,555,434 + Dsui_1492 0.65 -1.4
1,555,437 - Dsui_1492 0.65 -1.1
1,555,537 + Dsui_1492 0.69 +0.1
1,555,572 - Dsui_1492 0.70 -0.5
1,555,663 + Dsui_1492 0.73 -1.6
1,555,663 + Dsui_1492 0.73 -0.3
1,555,663 + Dsui_1492 0.73 -0.9
1,555,766 - Dsui_1492 0.77 -2.1
1,555,779 - Dsui_1492 0.77 -1.5
1,555,943 + Dsui_1492 0.83 -1.1
1,555,951 - Dsui_1492 0.83 +0.5
1,556,112 - Dsui_1492 0.89 +0.5
1,556,210 - +0.5
1,556,259 + -0.1
1,556,379 - -2.1
1,556,448 + -0.7
1,556,514 - +0.5
1,556,558 - -1.8
1,556,820 - Dsui_1493 0.26 -0.5
1,556,825 - Dsui_1493 0.26 +0.5
1,556,878 + Dsui_1493 0.30 -0.8
1,556,977 - Dsui_1493 0.37 -0.5
1,557,229 + Dsui_1493 0.55 -1.1
1,557,233 + Dsui_1493 0.55 -1.8

Or see this region's nucleotide sequence