Strain Fitness in Dechlorosoma suillum PS around Dsui_1145

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1144 and Dsui_1145 overlap by 1 nucleotidesDsui_1145 and Dsui_1146 are separated by 312 nucleotides Dsui_1144: Dsui_1144 - phage integrase family protein, at 1,197,990 to 1,199,660 _1144 Dsui_1145: Dsui_1145 - site-specific recombinase XerD, at 1,199,660 to 1,200,784 _1145 Dsui_1146: Dsui_1146 - high-affinity nickel permease, at 1,201,097 to 1,201,906 _1146 Position (kb) 1199 1200 1201Strain fitness (log2 ratio) -3 -2 -1 0 1at 1198.661 kb on - strand, within Dsui_1144at 1198.663 kb on - strand, within Dsui_1144at 1198.755 kb on + strand, within Dsui_1144at 1198.769 kb on + strand, within Dsui_1144at 1198.774 kb on + strand, within Dsui_1144at 1198.774 kb on + strand, within Dsui_1144at 1198.774 kb on + strand, within Dsui_1144at 1198.774 kb on + strand, within Dsui_1144at 1198.774 kb on + strand, within Dsui_1144at 1198.782 kb on - strand, within Dsui_1144at 1198.782 kb on - strand, within Dsui_1144at 1198.782 kb on - strand, within Dsui_1144at 1198.784 kb on - strand, within Dsui_1144at 1198.816 kb on - strand, within Dsui_1144at 1198.856 kb on + strand, within Dsui_1144at 1198.856 kb on + strand, within Dsui_1144at 1198.864 kb on - strand, within Dsui_1144at 1198.905 kb on + strand, within Dsui_1144at 1198.929 kb on - strand, within Dsui_1144at 1198.931 kb on + strand, within Dsui_1144at 1198.939 kb on - strand, within Dsui_1144at 1198.939 kb on - strand, within Dsui_1144at 1198.977 kb on + strand, within Dsui_1144at 1198.995 kb on + strand, within Dsui_1144at 1199.013 kb on - strand, within Dsui_1144at 1199.028 kb on - strand, within Dsui_1144at 1199.060 kb on - strand, within Dsui_1144at 1199.060 kb on - strand, within Dsui_1144at 1199.068 kb on - strand, within Dsui_1144at 1199.178 kb on - strand, within Dsui_1144at 1199.259 kb on + strand, within Dsui_1144at 1199.273 kb on - strand, within Dsui_1144at 1199.289 kb on + strand, within Dsui_1144at 1199.292 kb on + strand, within Dsui_1144at 1199.300 kb on - strand, within Dsui_1144at 1199.342 kb on + strand, within Dsui_1144at 1199.350 kb on - strand, within Dsui_1144at 1199.380 kb on - strand, within Dsui_1144at 1199.380 kb on - strand, within Dsui_1144at 1199.380 kb on - strand, within Dsui_1144at 1199.380 kb on - strand, within Dsui_1144at 1199.424 kb on + strand, within Dsui_1144at 1199.488 kb on + strand, within Dsui_1144at 1199.502 kb on + strandat 1199.547 kb on + strandat 1199.547 kb on + strandat 1199.555 kb on - strandat 1199.557 kb on - strandat 1199.577 kb on + strandat 1199.578 kb on + strandat 1199.610 kb on + strandat 1199.647 kb on + strandat 1199.698 kb on - strandat 1199.700 kb on - strandat 1199.708 kb on + strandat 1199.708 kb on + strandat 1199.716 kb on - strandat 1199.716 kb on - strandat 1199.725 kb on + strandat 1199.750 kb on + strandat 1199.771 kb on + strandat 1199.771 kb on + strandat 1199.779 kb on - strand, within Dsui_1145at 1199.793 kb on + strand, within Dsui_1145at 1199.793 kb on + strand, within Dsui_1145at 1199.801 kb on - strand, within Dsui_1145at 1199.801 kb on - strand, within Dsui_1145at 1199.865 kb on - strand, within Dsui_1145at 1199.867 kb on + strand, within Dsui_1145at 1199.872 kb on + strand, within Dsui_1145at 1199.875 kb on - strand, within Dsui_1145at 1199.938 kb on + strandat 1199.951 kb on + strand, within Dsui_1145at 1199.959 kb on - strand, within Dsui_1145at 1199.978 kb on + strand, within Dsui_1145at 1199.998 kb on + strand, within Dsui_1145at 1200.009 kb on + strand, within Dsui_1145at 1200.009 kb on + strand, within Dsui_1145at 1200.011 kb on - strand, within Dsui_1145at 1200.011 kb on - strand, within Dsui_1145at 1200.011 kb on - strand, within Dsui_1145at 1200.060 kb on + strand, within Dsui_1145at 1200.101 kb on - strand, within Dsui_1145at 1200.101 kb on - strand, within Dsui_1145at 1200.129 kb on + strand, within Dsui_1145at 1200.247 kb on + strand, within Dsui_1145at 1200.255 kb on - strand, within Dsui_1145at 1200.255 kb on - strand, within Dsui_1145at 1200.258 kb on + strand, within Dsui_1145at 1200.275 kb on - strand, within Dsui_1145at 1200.276 kb on - strand, within Dsui_1145at 1200.276 kb on - strand, within Dsui_1145at 1200.328 kb on - strand, within Dsui_1145at 1200.341 kb on - strand, within Dsui_1145at 1200.354 kb on + strand, within Dsui_1145at 1200.354 kb on + strand, within Dsui_1145at 1200.400 kb on + strand, within Dsui_1145at 1200.403 kb on + strand, within Dsui_1145at 1200.437 kb on + strand, within Dsui_1145at 1200.479 kb on + strand, within Dsui_1145at 1200.487 kb on - strand, within Dsui_1145at 1200.490 kb on - strand, within Dsui_1145at 1200.495 kb on - strand, within Dsui_1145at 1200.524 kb on + strand, within Dsui_1145at 1200.568 kb on + strand, within Dsui_1145at 1200.568 kb on + strand, within Dsui_1145at 1200.588 kb on - strand, within Dsui_1145at 1200.635 kb on - strand, within Dsui_1145at 1200.681 kb on - strandat 1200.728 kb on + strandat 1200.732 kb on + strandat 1200.740 kb on - strandat 1200.740 kb on - strandat 1200.740 kb on - strandat 1200.742 kb on - strandat 1200.743 kb on + strandat 1200.751 kb on + strandat 1200.758 kb on + strandat 1200.780 kb on - strandat 1200.866 kb on + strandat 1200.867 kb on + strandat 1200.868 kb on - strandat 1200.874 kb on - strandat 1200.884 kb on + strandat 1201.002 kb on + strandat 1201.045 kb on + strandat 1201.095 kb on + strandat 1201.183 kb on + strand, within Dsui_1146at 1201.285 kb on - strand, within Dsui_1146at 1201.344 kb on + strand, within Dsui_1146at 1201.457 kb on - strand, within Dsui_1146at 1201.603 kb on + strand, within Dsui_1146at 1201.619 kb on - strand, within Dsui_1146at 1201.621 kb on + strand, within Dsui_1146at 1201.639 kb on + strand, within Dsui_1146at 1201.740 kb on + strand, within Dsui_1146at 1201.776 kb on + strand, within Dsui_1146

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,198,661 - Dsui_1144 0.40 +0.4
1,198,663 - Dsui_1144 0.40 -0.6
1,198,755 + Dsui_1144 0.46 -1.2
1,198,769 + Dsui_1144 0.47 +0.4
1,198,774 + Dsui_1144 0.47 +0.4
1,198,774 + Dsui_1144 0.47 -2.2
1,198,774 + Dsui_1144 0.47 +0.4
1,198,774 + Dsui_1144 0.47 -1.6
1,198,774 + Dsui_1144 0.47 -0.6
1,198,782 - Dsui_1144 0.47 -1.6
1,198,782 - Dsui_1144 0.47 +0.4
1,198,782 - Dsui_1144 0.47 +0.4
1,198,784 - Dsui_1144 0.48 +0.4
1,198,816 - Dsui_1144 0.49 -1.2
1,198,856 + Dsui_1144 0.52 +0.4
1,198,856 + Dsui_1144 0.52 +0.4
1,198,864 - Dsui_1144 0.52 -1.2
1,198,905 + Dsui_1144 0.55 -0.6
1,198,929 - Dsui_1144 0.56 +0.4
1,198,931 + Dsui_1144 0.56 -1.2
1,198,939 - Dsui_1144 0.57 -1.2
1,198,939 - Dsui_1144 0.57 +0.4
1,198,977 + Dsui_1144 0.59 -1.2
1,198,995 + Dsui_1144 0.60 +0.4
1,199,013 - Dsui_1144 0.61 +0.4
1,199,028 - Dsui_1144 0.62 +0.4
1,199,060 - Dsui_1144 0.64 -1.2
1,199,060 - Dsui_1144 0.64 -0.6
1,199,068 - Dsui_1144 0.65 -0.6
1,199,178 - Dsui_1144 0.71 +0.4
1,199,259 + Dsui_1144 0.76 +0.4
1,199,273 - Dsui_1144 0.77 -0.6
1,199,289 + Dsui_1144 0.78 -1.6
1,199,292 + Dsui_1144 0.78 +0.4
1,199,300 - Dsui_1144 0.78 +0.4
1,199,342 + Dsui_1144 0.81 +0.4
1,199,350 - Dsui_1144 0.81 -3.0
1,199,380 - Dsui_1144 0.83 -1.2
1,199,380 - Dsui_1144 0.83 +0.4
1,199,380 - Dsui_1144 0.83 -0.6
1,199,380 - Dsui_1144 0.83 +0.4
1,199,424 + Dsui_1144 0.86 +0.4
1,199,488 + Dsui_1144 0.90 -1.9
1,199,502 + -0.6
1,199,547 + -1.2
1,199,547 + +0.4
1,199,555 - -1.2
1,199,557 - +0.4
1,199,577 + +0.4
1,199,578 + +0.4
1,199,610 + +0.4
1,199,647 + +0.4
1,199,698 - -1.2
1,199,700 - -0.6
1,199,708 + +0.4
1,199,708 + +0.4
1,199,716 - -1.9
1,199,716 - -0.6
1,199,725 + -1.9
1,199,750 + +0.4
1,199,771 + -2.2
1,199,771 + -2.4
1,199,779 - Dsui_1145 0.11 +0.4
1,199,793 + Dsui_1145 0.12 -1.6
1,199,793 + Dsui_1145 0.12 +0.4
1,199,801 - Dsui_1145 0.13 +0.4
1,199,801 - Dsui_1145 0.13 -0.6
1,199,865 - Dsui_1145 0.18 -1.9
1,199,867 + Dsui_1145 0.18 -0.6
1,199,872 + Dsui_1145 0.19 -2.2
1,199,875 - Dsui_1145 0.19 +0.4
1,199,938 + +0.4
1,199,951 + Dsui_1145 0.26 -0.6
1,199,959 - Dsui_1145 0.27 -2.4
1,199,978 + Dsui_1145 0.28 +0.4
1,199,998 + Dsui_1145 0.30 -0.6
1,200,009 + Dsui_1145 0.31 -1.6
1,200,009 + Dsui_1145 0.31 -2.7
1,200,011 - Dsui_1145 0.31 -1.2
1,200,011 - Dsui_1145 0.31 -1.6
1,200,011 - Dsui_1145 0.31 -2.9
1,200,060 + Dsui_1145 0.36 +0.4
1,200,101 - Dsui_1145 0.39 -2.2
1,200,101 - Dsui_1145 0.39 +0.4
1,200,129 + Dsui_1145 0.42 -2.6
1,200,247 + Dsui_1145 0.52 +0.4
1,200,255 - Dsui_1145 0.53 +0.4
1,200,255 - Dsui_1145 0.53 -1.9
1,200,258 + Dsui_1145 0.53 +0.4
1,200,275 - Dsui_1145 0.55 -0.6
1,200,276 - Dsui_1145 0.55 -1.9
1,200,276 - Dsui_1145 0.55 -2.4
1,200,328 - Dsui_1145 0.59 -0.6
1,200,341 - Dsui_1145 0.61 -2.6
1,200,354 + Dsui_1145 0.62 -1.2
1,200,354 + Dsui_1145 0.62 -1.9
1,200,400 + Dsui_1145 0.66 -0.6
1,200,403 + Dsui_1145 0.66 -0.6
1,200,437 + Dsui_1145 0.69 +0.4
1,200,479 + Dsui_1145 0.73 +0.4
1,200,487 - Dsui_1145 0.74 -0.6
1,200,490 - Dsui_1145 0.74 -0.6
1,200,495 - Dsui_1145 0.74 -2.9
1,200,524 + Dsui_1145 0.77 -3.2
1,200,568 + Dsui_1145 0.81 -1.6
1,200,568 + Dsui_1145 0.81 -1.9
1,200,588 - Dsui_1145 0.82 -1.5
1,200,635 - Dsui_1145 0.87 -1.6
1,200,681 - +0.4
1,200,728 + +0.4
1,200,732 + +0.4
1,200,740 - +1.4
1,200,740 - -0.3
1,200,740 - -1.2
1,200,742 - +0.4
1,200,743 + +0.4
1,200,751 + +0.4
1,200,758 + -2.6
1,200,780 - +0.4
1,200,866 + +0.4
1,200,867 + -0.6
1,200,868 - -1.3
1,200,874 - -1.9
1,200,884 + +0.4
1,201,002 + +0.4
1,201,045 + -0.6
1,201,095 + -2.4
1,201,183 + Dsui_1146 0.11 -0.6
1,201,285 - Dsui_1146 0.23 +1.6
1,201,344 + Dsui_1146 0.30 -0.9
1,201,457 - Dsui_1146 0.44 -0.1
1,201,603 + Dsui_1146 0.62 +0.4
1,201,619 - Dsui_1146 0.64 -0.8
1,201,621 + Dsui_1146 0.65 -3.0
1,201,639 + Dsui_1146 0.67 -2.7
1,201,740 + Dsui_1146 0.79 -0.6
1,201,776 + Dsui_1146 0.84 -0.6

Or see this region's nucleotide sequence