Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1144 and Dsui_1145 overlap by 1 nucleotides Dsui_1145 and Dsui_1146 are separated by 312 nucleotides
Dsui_1144: Dsui_1144 - phage integrase family protein, at 1,197,990 to 1,199,660
_1144
Dsui_1145: Dsui_1145 - site-specific recombinase XerD, at 1,199,660 to 1,200,784
_1145
Dsui_1146: Dsui_1146 - high-affinity nickel permease, at 1,201,097 to 1,201,906
_1146
Position (kb)
1199
1200
1201 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1198.661 kb on - strand, within Dsui_1144 at 1198.663 kb on - strand, within Dsui_1144 at 1198.755 kb on + strand, within Dsui_1144 at 1198.769 kb on + strand, within Dsui_1144 at 1198.774 kb on + strand, within Dsui_1144 at 1198.774 kb on + strand, within Dsui_1144 at 1198.774 kb on + strand, within Dsui_1144 at 1198.774 kb on + strand, within Dsui_1144 at 1198.774 kb on + strand, within Dsui_1144 at 1198.782 kb on - strand, within Dsui_1144 at 1198.782 kb on - strand, within Dsui_1144 at 1198.782 kb on - strand, within Dsui_1144 at 1198.784 kb on - strand, within Dsui_1144 at 1198.816 kb on - strand, within Dsui_1144 at 1198.856 kb on + strand, within Dsui_1144 at 1198.856 kb on + strand, within Dsui_1144 at 1198.864 kb on - strand, within Dsui_1144 at 1198.905 kb on + strand, within Dsui_1144 at 1198.929 kb on - strand, within Dsui_1144 at 1198.931 kb on + strand, within Dsui_1144 at 1198.939 kb on - strand, within Dsui_1144 at 1198.939 kb on - strand, within Dsui_1144 at 1198.977 kb on + strand, within Dsui_1144 at 1198.995 kb on + strand, within Dsui_1144 at 1199.013 kb on - strand, within Dsui_1144 at 1199.028 kb on - strand, within Dsui_1144 at 1199.060 kb on - strand, within Dsui_1144 at 1199.060 kb on - strand, within Dsui_1144 at 1199.068 kb on - strand, within Dsui_1144 at 1199.178 kb on - strand, within Dsui_1144 at 1199.259 kb on + strand, within Dsui_1144 at 1199.273 kb on - strand, within Dsui_1144 at 1199.289 kb on + strand, within Dsui_1144 at 1199.292 kb on + strand, within Dsui_1144 at 1199.300 kb on - strand, within Dsui_1144 at 1199.342 kb on + strand, within Dsui_1144 at 1199.350 kb on - strand, within Dsui_1144 at 1199.380 kb on - strand, within Dsui_1144 at 1199.380 kb on - strand, within Dsui_1144 at 1199.380 kb on - strand, within Dsui_1144 at 1199.380 kb on - strand, within Dsui_1144 at 1199.424 kb on + strand, within Dsui_1144 at 1199.488 kb on + strand, within Dsui_1144 at 1199.502 kb on + strand at 1199.547 kb on + strand at 1199.547 kb on + strand at 1199.555 kb on - strand at 1199.557 kb on - strand at 1199.577 kb on + strand at 1199.578 kb on + strand at 1199.610 kb on + strand at 1199.647 kb on + strand at 1199.698 kb on - strand at 1199.700 kb on - strand at 1199.708 kb on + strand at 1199.708 kb on + strand at 1199.716 kb on - strand at 1199.716 kb on - strand at 1199.725 kb on + strand at 1199.750 kb on + strand at 1199.771 kb on + strand at 1199.771 kb on + strand at 1199.779 kb on - strand, within Dsui_1145 at 1199.793 kb on + strand, within Dsui_1145 at 1199.793 kb on + strand, within Dsui_1145 at 1199.801 kb on - strand, within Dsui_1145 at 1199.801 kb on - strand, within Dsui_1145 at 1199.865 kb on - strand, within Dsui_1145 at 1199.867 kb on + strand, within Dsui_1145 at 1199.872 kb on + strand, within Dsui_1145 at 1199.875 kb on - strand, within Dsui_1145 at 1199.938 kb on + strand at 1199.951 kb on + strand, within Dsui_1145 at 1199.959 kb on - strand, within Dsui_1145 at 1199.978 kb on + strand, within Dsui_1145 at 1199.998 kb on + strand, within Dsui_1145 at 1200.009 kb on + strand, within Dsui_1145 at 1200.009 kb on + strand, within Dsui_1145 at 1200.011 kb on - strand, within Dsui_1145 at 1200.011 kb on - strand, within Dsui_1145 at 1200.011 kb on - strand, within Dsui_1145 at 1200.060 kb on + strand, within Dsui_1145 at 1200.101 kb on - strand, within Dsui_1145 at 1200.101 kb on - strand, within Dsui_1145 at 1200.129 kb on + strand, within Dsui_1145 at 1200.247 kb on + strand, within Dsui_1145 at 1200.255 kb on - strand, within Dsui_1145 at 1200.255 kb on - strand, within Dsui_1145 at 1200.258 kb on + strand, within Dsui_1145 at 1200.275 kb on - strand, within Dsui_1145 at 1200.276 kb on - strand, within Dsui_1145 at 1200.276 kb on - strand, within Dsui_1145 at 1200.328 kb on - strand, within Dsui_1145 at 1200.341 kb on - strand, within Dsui_1145 at 1200.354 kb on + strand, within Dsui_1145 at 1200.354 kb on + strand, within Dsui_1145 at 1200.400 kb on + strand, within Dsui_1145 at 1200.403 kb on + strand, within Dsui_1145 at 1200.437 kb on + strand, within Dsui_1145 at 1200.479 kb on + strand, within Dsui_1145 at 1200.487 kb on - strand, within Dsui_1145 at 1200.490 kb on - strand, within Dsui_1145 at 1200.495 kb on - strand, within Dsui_1145 at 1200.524 kb on + strand, within Dsui_1145 at 1200.568 kb on + strand, within Dsui_1145 at 1200.568 kb on + strand, within Dsui_1145 at 1200.588 kb on - strand, within Dsui_1145 at 1200.635 kb on - strand, within Dsui_1145 at 1200.681 kb on - strand at 1200.728 kb on + strand at 1200.732 kb on + strand at 1200.740 kb on - strand at 1200.740 kb on - strand at 1200.740 kb on - strand at 1200.742 kb on - strand at 1200.743 kb on + strand at 1200.751 kb on + strand at 1200.758 kb on + strand at 1200.780 kb on - strand at 1200.866 kb on + strand at 1200.867 kb on + strand at 1200.868 kb on - strand at 1200.874 kb on - strand at 1200.884 kb on + strand at 1201.002 kb on + strand at 1201.045 kb on + strand at 1201.095 kb on + strand at 1201.183 kb on + strand, within Dsui_1146 at 1201.285 kb on - strand, within Dsui_1146 at 1201.344 kb on + strand, within Dsui_1146 at 1201.457 kb on - strand, within Dsui_1146 at 1201.603 kb on + strand, within Dsui_1146 at 1201.619 kb on - strand, within Dsui_1146 at 1201.621 kb on + strand, within Dsui_1146 at 1201.639 kb on + strand, within Dsui_1146 at 1201.740 kb on + strand, within Dsui_1146 at 1201.776 kb on + strand, within Dsui_1146
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,198,661 - Dsui_1144 0.40 +0.4 1,198,663 - Dsui_1144 0.40 -0.6 1,198,755 + Dsui_1144 0.46 -1.2 1,198,769 + Dsui_1144 0.47 +0.4 1,198,774 + Dsui_1144 0.47 +0.4 1,198,774 + Dsui_1144 0.47 -2.2 1,198,774 + Dsui_1144 0.47 +0.4 1,198,774 + Dsui_1144 0.47 -1.6 1,198,774 + Dsui_1144 0.47 -0.6 1,198,782 - Dsui_1144 0.47 -1.6 1,198,782 - Dsui_1144 0.47 +0.4 1,198,782 - Dsui_1144 0.47 +0.4 1,198,784 - Dsui_1144 0.48 +0.4 1,198,816 - Dsui_1144 0.49 -1.2 1,198,856 + Dsui_1144 0.52 +0.4 1,198,856 + Dsui_1144 0.52 +0.4 1,198,864 - Dsui_1144 0.52 -1.2 1,198,905 + Dsui_1144 0.55 -0.6 1,198,929 - Dsui_1144 0.56 +0.4 1,198,931 + Dsui_1144 0.56 -1.2 1,198,939 - Dsui_1144 0.57 -1.2 1,198,939 - Dsui_1144 0.57 +0.4 1,198,977 + Dsui_1144 0.59 -1.2 1,198,995 + Dsui_1144 0.60 +0.4 1,199,013 - Dsui_1144 0.61 +0.4 1,199,028 - Dsui_1144 0.62 +0.4 1,199,060 - Dsui_1144 0.64 -1.2 1,199,060 - Dsui_1144 0.64 -0.6 1,199,068 - Dsui_1144 0.65 -0.6 1,199,178 - Dsui_1144 0.71 +0.4 1,199,259 + Dsui_1144 0.76 +0.4 1,199,273 - Dsui_1144 0.77 -0.6 1,199,289 + Dsui_1144 0.78 -1.6 1,199,292 + Dsui_1144 0.78 +0.4 1,199,300 - Dsui_1144 0.78 +0.4 1,199,342 + Dsui_1144 0.81 +0.4 1,199,350 - Dsui_1144 0.81 -3.0 1,199,380 - Dsui_1144 0.83 -1.2 1,199,380 - Dsui_1144 0.83 +0.4 1,199,380 - Dsui_1144 0.83 -0.6 1,199,380 - Dsui_1144 0.83 +0.4 1,199,424 + Dsui_1144 0.86 +0.4 1,199,488 + Dsui_1144 0.90 -1.9 1,199,502 + -0.6 1,199,547 + -1.2 1,199,547 + +0.4 1,199,555 - -1.2 1,199,557 - +0.4 1,199,577 + +0.4 1,199,578 + +0.4 1,199,610 + +0.4 1,199,647 + +0.4 1,199,698 - -1.2 1,199,700 - -0.6 1,199,708 + +0.4 1,199,708 + +0.4 1,199,716 - -1.9 1,199,716 - -0.6 1,199,725 + -1.9 1,199,750 + +0.4 1,199,771 + -2.2 1,199,771 + -2.4 1,199,779 - Dsui_1145 0.11 +0.4 1,199,793 + Dsui_1145 0.12 -1.6 1,199,793 + Dsui_1145 0.12 +0.4 1,199,801 - Dsui_1145 0.13 +0.4 1,199,801 - Dsui_1145 0.13 -0.6 1,199,865 - Dsui_1145 0.18 -1.9 1,199,867 + Dsui_1145 0.18 -0.6 1,199,872 + Dsui_1145 0.19 -2.2 1,199,875 - Dsui_1145 0.19 +0.4 1,199,938 + +0.4 1,199,951 + Dsui_1145 0.26 -0.6 1,199,959 - Dsui_1145 0.27 -2.4 1,199,978 + Dsui_1145 0.28 +0.4 1,199,998 + Dsui_1145 0.30 -0.6 1,200,009 + Dsui_1145 0.31 -1.6 1,200,009 + Dsui_1145 0.31 -2.7 1,200,011 - Dsui_1145 0.31 -1.2 1,200,011 - Dsui_1145 0.31 -1.6 1,200,011 - Dsui_1145 0.31 -2.9 1,200,060 + Dsui_1145 0.36 +0.4 1,200,101 - Dsui_1145 0.39 -2.2 1,200,101 - Dsui_1145 0.39 +0.4 1,200,129 + Dsui_1145 0.42 -2.6 1,200,247 + Dsui_1145 0.52 +0.4 1,200,255 - Dsui_1145 0.53 +0.4 1,200,255 - Dsui_1145 0.53 -1.9 1,200,258 + Dsui_1145 0.53 +0.4 1,200,275 - Dsui_1145 0.55 -0.6 1,200,276 - Dsui_1145 0.55 -1.9 1,200,276 - Dsui_1145 0.55 -2.4 1,200,328 - Dsui_1145 0.59 -0.6 1,200,341 - Dsui_1145 0.61 -2.6 1,200,354 + Dsui_1145 0.62 -1.2 1,200,354 + Dsui_1145 0.62 -1.9 1,200,400 + Dsui_1145 0.66 -0.6 1,200,403 + Dsui_1145 0.66 -0.6 1,200,437 + Dsui_1145 0.69 +0.4 1,200,479 + Dsui_1145 0.73 +0.4 1,200,487 - Dsui_1145 0.74 -0.6 1,200,490 - Dsui_1145 0.74 -0.6 1,200,495 - Dsui_1145 0.74 -2.9 1,200,524 + Dsui_1145 0.77 -3.2 1,200,568 + Dsui_1145 0.81 -1.6 1,200,568 + Dsui_1145 0.81 -1.9 1,200,588 - Dsui_1145 0.82 -1.5 1,200,635 - Dsui_1145 0.87 -1.6 1,200,681 - +0.4 1,200,728 + +0.4 1,200,732 + +0.4 1,200,740 - +1.4 1,200,740 - -0.3 1,200,740 - -1.2 1,200,742 - +0.4 1,200,743 + +0.4 1,200,751 + +0.4 1,200,758 + -2.6 1,200,780 - +0.4 1,200,866 + +0.4 1,200,867 + -0.6 1,200,868 - -1.3 1,200,874 - -1.9 1,200,884 + +0.4 1,201,002 + +0.4 1,201,045 + -0.6 1,201,095 + -2.4 1,201,183 + Dsui_1146 0.11 -0.6 1,201,285 - Dsui_1146 0.23 +1.6 1,201,344 + Dsui_1146 0.30 -0.9 1,201,457 - Dsui_1146 0.44 -0.1 1,201,603 + Dsui_1146 0.62 +0.4 1,201,619 - Dsui_1146 0.64 -0.8 1,201,621 + Dsui_1146 0.65 -3.0 1,201,639 + Dsui_1146 0.67 -2.7 1,201,740 + Dsui_1146 0.79 -0.6 1,201,776 + Dsui_1146 0.84 -0.6
Or see this region's nucleotide sequence