Strain Fitness in Dechlorosoma suillum PS around Dsui_1112

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1111 and Dsui_1112 are separated by 55 nucleotidesDsui_1112 and Dsui_1113 are separated by 77 nucleotides Dsui_1111: Dsui_1111 - ABC-type branched-chain amino acid transport system, permease component, at 1,157,673 to 1,158,740 _1111 Dsui_1112: Dsui_1112 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,158,796 to 1,160,124 _1112 Dsui_1113: Dsui_1113 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,160,202 to 1,161,038 _1113 Position (kb) 1158 1159 1160 1161Strain fitness (log2 ratio) -3 -2 -1 0 1at 1157.982 kb on - strand, within Dsui_1111at 1158.316 kb on - strand, within Dsui_1111at 1158.353 kb on + strand, within Dsui_1111at 1158.407 kb on + strand, within Dsui_1111at 1158.408 kb on + strand, within Dsui_1111at 1158.454 kb on + strand, within Dsui_1111at 1158.523 kb on + strand, within Dsui_1111at 1158.613 kb on + strand, within Dsui_1111at 1158.658 kb on - strandat 1158.686 kb on - strandat 1158.739 kb on + strandat 1158.754 kb on + strandat 1158.777 kb on + strandat 1158.786 kb on + strandat 1158.860 kb on + strandat 1158.895 kb on + strandat 1158.929 kb on + strand, within Dsui_1112at 1159.008 kb on + strand, within Dsui_1112at 1159.022 kb on + strand, within Dsui_1112at 1159.135 kb on + strand, within Dsui_1112at 1159.145 kb on + strand, within Dsui_1112at 1159.148 kb on - strand, within Dsui_1112at 1159.250 kb on + strand, within Dsui_1112at 1159.298 kb on + strand, within Dsui_1112at 1159.308 kb on + strand, within Dsui_1112at 1159.533 kb on - strand, within Dsui_1112at 1159.624 kb on + strand, within Dsui_1112at 1159.771 kb on + strand, within Dsui_1112at 1159.827 kb on + strand, within Dsui_1112at 1159.878 kb on - strand, within Dsui_1112at 1160.330 kb on + strand, within Dsui_1113at 1160.511 kb on + strand, within Dsui_1113at 1160.516 kb on + strand, within Dsui_1113at 1160.534 kb on - strand, within Dsui_1113at 1160.650 kb on + strand, within Dsui_1113at 1160.709 kb on + strand, within Dsui_1113at 1160.843 kb on + strand, within Dsui_1113at 1160.920 kb on + strand, within Dsui_1113at 1160.926 kb on - strand, within Dsui_1113at 1160.962 kb on - strandat 1161.007 kb on - strandat 1161.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,157,982 - Dsui_1111 0.29 -1.8
1,158,316 - Dsui_1111 0.60 +0.5
1,158,353 + Dsui_1111 0.64 -1.5
1,158,407 + Dsui_1111 0.69 -1.1
1,158,408 + Dsui_1111 0.69 -0.5
1,158,454 + Dsui_1111 0.73 +0.5
1,158,523 + Dsui_1111 0.80 -1.8
1,158,613 + Dsui_1111 0.88 -2.1
1,158,658 - -3.2
1,158,686 - -0.5
1,158,739 + -1.5
1,158,754 + +0.5
1,158,777 + -0.5
1,158,786 + +0.5
1,158,860 + +0.5
1,158,895 + +0.5
1,158,929 + Dsui_1112 0.10 +0.5
1,159,008 + Dsui_1112 0.16 +0.5
1,159,022 + Dsui_1112 0.17 +0.5
1,159,135 + Dsui_1112 0.26 +0.5
1,159,145 + Dsui_1112 0.26 -1.1
1,159,148 - Dsui_1112 0.26 -0.5
1,159,250 + Dsui_1112 0.34 +0.5
1,159,298 + Dsui_1112 0.38 +0.5
1,159,308 + Dsui_1112 0.39 +0.5
1,159,533 - Dsui_1112 0.55 +0.5
1,159,624 + Dsui_1112 0.62 +0.5
1,159,771 + Dsui_1112 0.73 +0.5
1,159,827 + Dsui_1112 0.78 +0.5
1,159,878 - Dsui_1112 0.81 +0.5
1,160,330 + Dsui_1113 0.15 -0.5
1,160,511 + Dsui_1113 0.37 -0.5
1,160,516 + Dsui_1113 0.38 -1.5
1,160,534 - Dsui_1113 0.40 +0.5
1,160,650 + Dsui_1113 0.54 +0.5
1,160,709 + Dsui_1113 0.61 -2.1
1,160,843 + Dsui_1113 0.77 +0.5
1,160,920 + Dsui_1113 0.86 +0.5
1,160,926 - Dsui_1113 0.86 +0.5
1,160,962 - +0.5
1,161,007 - -0.5
1,161,044 - -1.8

Or see this region's nucleotide sequence