Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0976 and Dsui_0977 are separated by 85 nucleotides Dsui_0977 and Dsui_0978 are separated by 87 nucleotides Dsui_0978 and Dsui_0979 are separated by 116 nucleotides
Dsui_0976: Dsui_0976 - acetyl-CoA acetyltransferase, at 1,002,373 to 1,003,554
_0976
Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776
_0977
Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466
_0978
Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167
_0979
Position (kb)
1003
1004
1005 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1002.689 kb on + strand, within Dsui_0976 at 1002.884 kb on - strand, within Dsui_0976 at 1002.906 kb on - strand, within Dsui_0976 at 1002.943 kb on - strand, within Dsui_0976 at 1002.955 kb on + strand, within Dsui_0976 at 1003.072 kb on - strand, within Dsui_0976 at 1003.157 kb on - strand, within Dsui_0976 at 1003.171 kb on + strand, within Dsui_0976 at 1003.172 kb on - strand at 1003.244 kb on - strand, within Dsui_0976 at 1003.301 kb on + strand, within Dsui_0976 at 1003.466 kb on + strand at 1003.556 kb on - strand at 1003.556 kb on - strand at 1003.559 kb on + strand at 1003.559 kb on + strand at 1003.567 kb on - strand at 1003.748 kb on + strand at 1003.786 kb on + strand, within Dsui_0977 at 1003.856 kb on - strand, within Dsui_0977 at 1003.890 kb on + strand, within Dsui_0977 at 1003.933 kb on - strand, within Dsui_0977 at 1004.088 kb on + strand, within Dsui_0977 at 1004.154 kb on + strand, within Dsui_0977 at 1004.171 kb on + strand, within Dsui_0977 at 1004.189 kb on + strand, within Dsui_0977 at 1004.233 kb on + strand, within Dsui_0977 at 1004.562 kb on + strand, within Dsui_0977 at 1004.568 kb on + strand, within Dsui_0977 at 1004.641 kb on + strand, within Dsui_0977 at 1004.657 kb on + strand, within Dsui_0977 at 1004.762 kb on - strand at 1004.778 kb on - strand at 1004.829 kb on + strand at 1004.829 kb on + strand at 1004.996 kb on - strand, within Dsui_0978 at 1005.128 kb on - strand, within Dsui_0978 at 1005.178 kb on + strand, within Dsui_0978 at 1005.222 kb on - strand, within Dsui_0978 at 1005.414 kb on - strand at 1005.540 kb on + strand at 1005.670 kb on + strand, within Dsui_0979
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,002,689 + Dsui_0976 0.27 +0.6 1,002,884 - Dsui_0976 0.43 -0.4 1,002,906 - Dsui_0976 0.45 +0.6 1,002,943 - Dsui_0976 0.48 -1.0 1,002,955 + Dsui_0976 0.49 +0.6 1,003,072 - Dsui_0976 0.59 +0.6 1,003,157 - Dsui_0976 0.66 -1.4 1,003,171 + Dsui_0976 0.68 -1.8 1,003,172 - +0.6 1,003,244 - Dsui_0976 0.74 -0.4 1,003,301 + Dsui_0976 0.79 +0.3 1,003,466 + +1.8 1,003,556 - -1.0 1,003,556 - -1.0 1,003,559 + -1.9 1,003,559 + -1.0 1,003,567 - -3.4 1,003,748 + -0.4 1,003,786 + Dsui_0977 0.13 +0.6 1,003,856 - Dsui_0977 0.19 +0.6 1,003,890 + Dsui_0977 0.22 -0.2 1,003,933 - Dsui_0977 0.26 +0.6 1,004,088 + Dsui_0977 0.39 -0.4 1,004,154 + Dsui_0977 0.45 +0.6 1,004,171 + Dsui_0977 0.47 -0.4 1,004,189 + Dsui_0977 0.48 +0.6 1,004,233 + Dsui_0977 0.52 +1.6 1,004,562 + Dsui_0977 0.81 -1.0 1,004,568 + Dsui_0977 0.82 -0.4 1,004,641 + Dsui_0977 0.88 +0.1 1,004,657 + Dsui_0977 0.89 +1.8 1,004,762 - -0.4 1,004,778 - +0.6 1,004,829 + -1.9 1,004,829 + +0.6 1,004,996 - Dsui_0978 0.22 +0.6 1,005,128 - Dsui_0978 0.44 +0.6 1,005,178 + Dsui_0978 0.52 -1.6 1,005,222 - Dsui_0978 0.59 -2.4 1,005,414 - -2.9 1,005,540 + -2.0 1,005,670 + Dsui_0979 0.15 -0.3
Or see this region's nucleotide sequence