Strain Fitness in Dechlorosoma suillum PS around Dsui_0845

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0844 and Dsui_0845 are separated by 123 nucleotidesDsui_0845 and Dsui_0846 are separated by 273 nucleotides Dsui_0844: Dsui_0844 - ABC-type branched-chain amino acid transport system, periplasmic component, at 860,019 to 861,173 _0844 Dsui_0845: Dsui_0845 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 861,297 to 862,994 _0845 Dsui_0846: Dsui_0846 - glucose-inhibited division protein A, at 863,268 to 865,142 _0846 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 860.317 kb on - strand, within Dsui_0844at 860.399 kb on - strand, within Dsui_0844at 860.467 kb on + strand, within Dsui_0844at 860.475 kb on - strand, within Dsui_0844at 860.567 kb on - strand, within Dsui_0844at 860.653 kb on + strand, within Dsui_0844at 860.709 kb on + strand, within Dsui_0844at 860.768 kb on + strand, within Dsui_0844at 860.956 kb on - strand, within Dsui_0844at 860.961 kb on - strand, within Dsui_0844at 861.001 kb on - strand, within Dsui_0844at 861.010 kb on + strand, within Dsui_0844at 861.010 kb on + strand, within Dsui_0844at 861.018 kb on - strand, within Dsui_0844at 861.031 kb on - strand, within Dsui_0844at 861.116 kb on - strandat 861.116 kb on - strandat 861.223 kb on + strandat 861.228 kb on + strandat 861.231 kb on - strandat 861.253 kb on - strandat 861.278 kb on - strandat 861.278 kb on - strandat 861.307 kb on + strandat 861.307 kb on + strandat 861.385 kb on - strandat 861.409 kb on - strandat 861.419 kb on - strandat 861.453 kb on - strandat 861.469 kb on - strandat 861.475 kb on - strand, within Dsui_0845at 861.531 kb on + strand, within Dsui_0845at 861.536 kb on + strand, within Dsui_0845at 861.602 kb on + strand, within Dsui_0845at 861.610 kb on - strand, within Dsui_0845at 861.610 kb on - strand, within Dsui_0845at 861.613 kb on + strand, within Dsui_0845at 861.615 kb on + strand, within Dsui_0845at 861.631 kb on - strand, within Dsui_0845at 861.664 kb on + strand, within Dsui_0845at 861.664 kb on + strand, within Dsui_0845at 861.664 kb on + strand, within Dsui_0845at 861.672 kb on - strand, within Dsui_0845at 861.683 kb on - strand, within Dsui_0845at 861.770 kb on - strand, within Dsui_0845at 861.773 kb on + strand, within Dsui_0845at 861.787 kb on - strand, within Dsui_0845at 861.787 kb on - strand, within Dsui_0845at 861.787 kb on - strand, within Dsui_0845at 861.814 kb on + strand, within Dsui_0845at 861.822 kb on - strand, within Dsui_0845at 861.830 kb on + strand, within Dsui_0845at 861.848 kb on - strand, within Dsui_0845at 861.894 kb on - strand, within Dsui_0845at 861.905 kb on - strand, within Dsui_0845at 861.905 kb on - strand, within Dsui_0845at 861.935 kb on - strand, within Dsui_0845at 861.968 kb on + strand, within Dsui_0845at 862.016 kb on - strand, within Dsui_0845at 862.026 kb on - strand, within Dsui_0845at 862.065 kb on - strand, within Dsui_0845at 862.080 kb on - strand, within Dsui_0845at 862.114 kb on - strand, within Dsui_0845at 862.135 kb on - strand, within Dsui_0845at 862.248 kb on + strand, within Dsui_0845at 862.283 kb on - strand, within Dsui_0845at 862.296 kb on - strand, within Dsui_0845at 862.306 kb on + strand, within Dsui_0845at 862.315 kb on + strand, within Dsui_0845at 862.370 kb on - strand, within Dsui_0845at 862.384 kb on - strand, within Dsui_0845at 862.426 kb on + strand, within Dsui_0845at 862.441 kb on + strand, within Dsui_0845at 862.467 kb on + strand, within Dsui_0845at 862.467 kb on + strand, within Dsui_0845at 862.469 kb on + strandat 862.539 kb on + strand, within Dsui_0845at 862.589 kb on - strand, within Dsui_0845at 862.592 kb on + strand, within Dsui_0845at 862.623 kb on - strand, within Dsui_0845at 862.645 kb on - strand, within Dsui_0845at 862.688 kb on + strand, within Dsui_0845at 862.698 kb on - strand, within Dsui_0845at 862.698 kb on - strand, within Dsui_0845at 862.700 kb on + strand, within Dsui_0845at 862.743 kb on - strand, within Dsui_0845at 862.743 kb on - strand, within Dsui_0845at 862.795 kb on - strand, within Dsui_0845at 862.928 kb on + strandat 862.929 kb on - strandat 862.938 kb on - strandat 862.942 kb on + strandat 863.041 kb on - strandat 863.068 kb on + strandat 863.206 kb on + strandat 863.206 kb on + strandat 863.206 kb on + strandat 863.206 kb on + strandat 863.206 kb on + strandat 863.214 kb on - strandat 863.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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860,317 - Dsui_0844 0.26 +0.0
860,399 - Dsui_0844 0.33 +0.0
860,467 + Dsui_0844 0.39 -0.4
860,475 - Dsui_0844 0.39 -0.1
860,567 - Dsui_0844 0.47 -0.5
860,653 + Dsui_0844 0.55 -0.4
860,709 + Dsui_0844 0.60 +0.6
860,768 + Dsui_0844 0.65 +0.6
860,956 - Dsui_0844 0.81 -0.1
860,961 - Dsui_0844 0.82 +0.2
861,001 - Dsui_0844 0.85 +0.1
861,010 + Dsui_0844 0.86 -1.0
861,010 + Dsui_0844 0.86 -1.0
861,018 - Dsui_0844 0.86 -0.0
861,031 - Dsui_0844 0.88 -0.0
861,116 - +0.2
861,116 - -0.5
861,223 + +0.6
861,228 + -1.0
861,231 - -0.4
861,253 - -3.2
861,278 - -1.0
861,278 - +0.6
861,307 + +0.6
861,307 + +0.6
861,385 - +0.6
861,409 - -1.8
861,419 - +0.6
861,453 - -0.4
861,469 - +0.6
861,475 - Dsui_0845 0.10 +1.6
861,531 + Dsui_0845 0.14 +0.6
861,536 + Dsui_0845 0.14 +0.6
861,602 + Dsui_0845 0.18 -0.4
861,610 - Dsui_0845 0.18 -0.6
861,610 - Dsui_0845 0.18 +0.6
861,613 + Dsui_0845 0.19 +0.6
861,615 + Dsui_0845 0.19 +0.6
861,631 - Dsui_0845 0.20 -0.4
861,664 + Dsui_0845 0.22 +0.6
861,664 + Dsui_0845 0.22 -0.4
861,664 + Dsui_0845 0.22 -0.4
861,672 - Dsui_0845 0.22 -0.9
861,683 - Dsui_0845 0.23 -2.0
861,770 - Dsui_0845 0.28 -2.2
861,773 + Dsui_0845 0.28 -1.0
861,787 - Dsui_0845 0.29 -1.3
861,787 - Dsui_0845 0.29 -0.2
861,787 - Dsui_0845 0.29 -1.8
861,814 + Dsui_0845 0.30 -1.0
861,822 - Dsui_0845 0.31 +2.1
861,830 + Dsui_0845 0.31 +0.6
861,848 - Dsui_0845 0.32 +1.1
861,894 - Dsui_0845 0.35 -1.8
861,905 - Dsui_0845 0.36 -0.0
861,905 - Dsui_0845 0.36 -0.0
861,935 - Dsui_0845 0.38 +0.1
861,968 + Dsui_0845 0.40 +0.6
862,016 - Dsui_0845 0.42 -1.1
862,026 - Dsui_0845 0.43 -1.4
862,065 - Dsui_0845 0.45 -1.6
862,080 - Dsui_0845 0.46 +0.6
862,114 - Dsui_0845 0.48 -0.3
862,135 - Dsui_0845 0.49 -2.9
862,248 + Dsui_0845 0.56 -0.4
862,283 - Dsui_0845 0.58 +0.2
862,296 - Dsui_0845 0.59 -0.4
862,306 + Dsui_0845 0.59 -0.4
862,315 + Dsui_0845 0.60 -0.4
862,370 - Dsui_0845 0.63 -0.8
862,384 - Dsui_0845 0.64 -0.4
862,426 + Dsui_0845 0.66 +0.6
862,441 + Dsui_0845 0.67 -2.0
862,467 + Dsui_0845 0.69 -0.4
862,467 + Dsui_0845 0.69 -1.8
862,469 + +0.6
862,539 + Dsui_0845 0.73 -2.8
862,589 - Dsui_0845 0.76 +0.6
862,592 + Dsui_0845 0.76 +0.6
862,623 - Dsui_0845 0.78 -2.4
862,645 - Dsui_0845 0.79 +1.6
862,688 + Dsui_0845 0.82 -0.4
862,698 - Dsui_0845 0.83 -1.0
862,698 - Dsui_0845 0.83 -0.8
862,700 + Dsui_0845 0.83 -0.0
862,743 - Dsui_0845 0.85 -0.7
862,743 - Dsui_0845 0.85 +0.3
862,795 - Dsui_0845 0.88 -1.1
862,928 + -1.0
862,929 - -1.4
862,938 - -1.0
862,942 + -1.8
863,041 - +0.6
863,068 + -1.4
863,206 + +0.0
863,206 + -0.2
863,206 + -0.3
863,206 + +0.0
863,206 + +0.0
863,214 - +0.6
863,779 - +0.6

Or see this region's nucleotide sequence