Strain Fitness in Dechlorosoma suillum PS around Dsui_0664

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0662 and Dsui_0663 overlap by 8 nucleotidesDsui_0663 and Dsui_0664 overlap by 14 nucleotidesDsui_0664 and Dsui_0665 are separated by 78 nucleotides Dsui_0662: Dsui_0662 - phosphomethylpyrimidine kinase, at 659,258 to 660,100 _0662 Dsui_0663: Dsui_0663 - thiamine-phosphate pyrophosphorylase, at 660,093 to 660,740 _0663 Dsui_0664: Dsui_0664 - glutamate-1-semialdehyde-2,1-aminomutase, at 660,727 to 662,010 _0664 Dsui_0665: Dsui_0665 - polyphosphate kinase 2, PA0141 family, at 662,089 to 663,288 _0665 Position (kb) 660 661 662 663Strain fitness (log2 ratio) -1 0 1 2at 660.104 kb on + strandat 660.723 kb on + strandat 662.104 kb on + strandat 662.225 kb on + strand, within Dsui_0665at 662.225 kb on + strandat 662.226 kb on - strand, within Dsui_0665at 662.233 kb on - strand, within Dsui_0665at 662.233 kb on - strand, within Dsui_0665at 662.329 kb on - strand, within Dsui_0665at 662.366 kb on + strand, within Dsui_0665at 662.454 kb on + strand, within Dsui_0665at 662.454 kb on + strand, within Dsui_0665at 662.454 kb on + strand, within Dsui_0665at 662.568 kb on + strand, within Dsui_0665at 662.668 kb on - strand, within Dsui_0665at 662.708 kb on + strand, within Dsui_0665at 662.716 kb on - strand, within Dsui_0665at 662.751 kb on - strand, within Dsui_0665at 662.792 kb on - strand, within Dsui_0665

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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660,104 + -0.4
660,723 + +0.2
662,104 + -0.4
662,225 + Dsui_0665 0.11 -0.4
662,225 + +2.6
662,226 - Dsui_0665 0.11 +0.5
662,233 - Dsui_0665 0.12 +0.1
662,233 - Dsui_0665 0.12 +0.0
662,329 - Dsui_0665 0.20 -0.2
662,366 + Dsui_0665 0.23 -0.4
662,454 + Dsui_0665 0.30 -0.2
662,454 + Dsui_0665 0.30 +0.1
662,454 + Dsui_0665 0.30 +0.6
662,568 + Dsui_0665 0.40 -1.4
662,668 - Dsui_0665 0.48 -0.0
662,708 + Dsui_0665 0.52 +0.6
662,716 - Dsui_0665 0.52 -0.4
662,751 - Dsui_0665 0.55 -0.3
662,792 - Dsui_0665 0.59 +0.2

Or see this region's nucleotide sequence