Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0510 and Dsui_0511 are separated by 10 nucleotides Dsui_0511 and Dsui_0512 are separated by 318 nucleotides Dsui_0512 and Dsui_0513 are separated by 80 nucleotides
Dsui_0510: Dsui_0510 - ferredoxin-type protein, NapH/MauN family, at 514,661 to 515,581
_0510
Dsui_0511: Dsui_0511 - nitrate reductase cytochrome c-type subunit, at 515,592 to 516,068
_0511
Dsui_0512: Dsui_0512 - Methylmalonyl-CoA epimerase (EC 5.1.99.1) <small>(from data)</small>, at 516,387 to 516,863
_0512
Dsui_0513: Dsui_0513 - diguanylate cyclase (GGDEF) domain-containing protein, at 516,944 to 518,818
_0513
Position (kb) 516
517 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 515.516 kb on + strand at 515.558 kb on + strand at 515.615 kb on - strand at 515.770 kb on + strand, within Dsui_0511 at 515.778 kb on - strand, within Dsui_0511 at 515.868 kb on - strand, within Dsui_0511 at 515.957 kb on + strand, within Dsui_0511 at 516.055 kb on - strand at 516.062 kb on + strand at 516.070 kb on - strand at 516.391 kb on - strand at 516.391 kb on - strand at 516.415 kb on + strand at 516.425 kb on - strand at 516.455 kb on + strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.463 kb on - strand, within Dsui_0512 at 516.533 kb on + strand, within Dsui_0512 at 516.555 kb on + strand, within Dsui_0512 at 516.622 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.627 kb on + strand, within Dsui_0512 at 516.635 kb on - strand, within Dsui_0512 at 516.662 kb on + strand, within Dsui_0512 at 516.662 kb on + strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.670 kb on - strand, within Dsui_0512 at 516.694 kb on - strand, within Dsui_0512 at 516.727 kb on - strand, within Dsui_0512 at 516.727 kb on - strand, within Dsui_0512 at 516.761 kb on - strand, within Dsui_0512 at 516.790 kb on + strand, within Dsui_0512 at 516.852 kb on + strand at 516.880 kb on - strand at 516.930 kb on - strand at 516.955 kb on + strand at 517.029 kb on - strand at 517.261 kb on + strand, within Dsui_0513 at 517.286 kb on + strand at 517.306 kb on + strand at 517.331 kb on + strand at 517.345 kb on - strand, within Dsui_0513 at 517.366 kb on + strand at 517.407 kb on - strand, within Dsui_0513 at 517.407 kb on - strand, within Dsui_0513 at 517.492 kb on + strand, within Dsui_0513 at 517.492 kb on + strand, within Dsui_0513 at 517.493 kb on + strand, within Dsui_0513 at 517.584 kb on + strand, within Dsui_0513 at 517.622 kb on - strand, within Dsui_0513 at 517.633 kb on + strand, within Dsui_0513 at 517.633 kb on + strand, within Dsui_0513 at 517.641 kb on - strand, within Dsui_0513 at 517.646 kb on - strand, within Dsui_0513 at 517.696 kb on + strand at 517.704 kb on - strand, within Dsui_0513 at 517.724 kb on - strand, within Dsui_0513 at 517.753 kb on + strand, within Dsui_0513 at 517.776 kb on - strand, within Dsui_0513
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 515,516 + +0.5 515,558 + -1.5 515,615 - +0.5 515,770 + Dsui_0511 0.37 -0.5 515,778 - Dsui_0511 0.39 -0.5 515,868 - Dsui_0511 0.58 +0.5 515,957 + Dsui_0511 0.77 -1.1 516,055 - +0.5 516,062 + -2.9 516,070 - -1.1 516,391 - -2.1 516,391 - +0.5 516,415 + +0.5 516,425 - -0.5 516,455 + Dsui_0512 0.14 -0.5 516,463 - Dsui_0512 0.16 -1.1 516,463 - Dsui_0512 0.16 +0.5 516,533 + Dsui_0512 0.31 +0.5 516,555 + Dsui_0512 0.35 -2.5 516,622 + Dsui_0512 0.49 +0.5 516,627 + Dsui_0512 0.50 -4.0 516,627 + Dsui_0512 0.50 -2.3 516,627 + Dsui_0512 0.50 -5.6 516,635 - Dsui_0512 0.52 -0.5 516,662 + Dsui_0512 0.58 -2.5 516,662 + Dsui_0512 0.58 -3.4 516,670 - Dsui_0512 0.59 -1.1 516,670 - Dsui_0512 0.59 +0.5 516,670 - Dsui_0512 0.59 -1.1 516,694 - Dsui_0512 0.64 +0.5 516,727 - Dsui_0512 0.71 -2.3 516,727 - Dsui_0512 0.71 -2.1 516,761 - Dsui_0512 0.78 -0.5 516,790 + Dsui_0512 0.84 -2.3 516,852 + -1.6 516,880 - -1.1 516,930 - -2.9 516,955 + +0.5 517,029 - -1.1 517,261 + Dsui_0513 0.17 -1.5 517,286 + +0.5 517,306 + +0.5 517,331 + +0.5 517,345 - Dsui_0513 0.21 -0.5 517,366 + +0.5 517,407 - Dsui_0513 0.25 -3.0 517,407 - Dsui_0513 0.25 +0.5 517,492 + Dsui_0513 0.29 -2.0 517,492 + Dsui_0513 0.29 +0.5 517,493 + Dsui_0513 0.29 -1.5 517,584 + Dsui_0513 0.34 -0.5 517,622 - Dsui_0513 0.36 +0.5 517,633 + Dsui_0513 0.37 -1.8 517,633 + Dsui_0513 0.37 -2.0 517,641 - Dsui_0513 0.37 -2.3 517,646 - Dsui_0513 0.37 -0.5 517,696 + +0.5 517,704 - Dsui_0513 0.41 -1.5 517,724 - Dsui_0513 0.42 -0.8 517,753 + Dsui_0513 0.43 -0.5 517,776 - Dsui_0513 0.44 -0.7
Or see this region's nucleotide sequence