Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0485 and Dsui_0486 overlap by 4 nucleotides Dsui_0486 and Dsui_0487 are separated by 156 nucleotides Dsui_0487 and Dsui_0488 overlap by 4 nucleotides Dsui_0488 and Dsui_0489 are separated by 72 nucleotides
Dsui_0485: Dsui_0485 - Holliday junction DNA helicase, RuvA subunit, at 488,744 to 489,328
_0485
Dsui_0486: Dsui_0486 - crossover junction endodeoxyribonuclease RuvC, at 489,325 to 489,930
_0486
Dsui_0487: Dsui_0487 - hemerythrin HHE cation binding domain-containing protein, at 490,087 to 490,620
_0487
Dsui_0488: Dsui_0488 - EamA-like transporter family, at 490,617 to 491,474
_0488
Dsui_0489: Dsui_0489 - DNA-binding regulatory protein, YebC/PmpR family, at 491,547 to 492,272
_0489
Position (kb) 490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 489.354 kb on - strand at 489.946 kb on - strand at 490.008 kb on - strand at 490.055 kb on + strand at 490.059 kb on + strand at 490.060 kb on + strand at 490.068 kb on - strand at 490.140 kb on + strand at 490.141 kb on - strand, within Dsui_0487 at 490.214 kb on - strand, within Dsui_0487 at 490.306 kb on - strand, within Dsui_0487 at 490.374 kb on + strand, within Dsui_0487 at 490.611 kb on - strand at 490.715 kb on + strand, within Dsui_0488 at 490.723 kb on - strand, within Dsui_0488 at 490.728 kb on - strand, within Dsui_0488 at 490.738 kb on - strand, within Dsui_0488 at 490.791 kb on - strand, within Dsui_0488 at 490.849 kb on + strand, within Dsui_0488 at 490.899 kb on + strand at 490.991 kb on - strand, within Dsui_0488 at 491.078 kb on + strand, within Dsui_0488 at 491.081 kb on - strand, within Dsui_0488 at 491.182 kb on + strand, within Dsui_0488 at 491.259 kb on + strand, within Dsui_0488 at 491.300 kb on - strand, within Dsui_0488 at 491.355 kb on - strand, within Dsui_0488 at 491.357 kb on + strand, within Dsui_0488 at 491.395 kb on + strand at 491.436 kb on + strand at 491.442 kb on - strand at 491.568 kb on + strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.577 kb on - strand at 491.613 kb on - strand at 491.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 489,354 - -0.3 489,946 - +0.5 490,008 - -1.1 490,055 + -1.5 490,059 + -2.1 490,060 + -2.8 490,068 - +0.5 490,140 + -1.5 490,141 - Dsui_0487 0.10 +0.5 490,214 - Dsui_0487 0.24 -2.1 490,306 - Dsui_0487 0.41 -1.8 490,374 + Dsui_0487 0.54 -1.5 490,611 - +1.4 490,715 + Dsui_0488 0.11 -2.1 490,723 - Dsui_0488 0.12 -1.7 490,728 - Dsui_0488 0.13 +0.0 490,738 - Dsui_0488 0.14 -0.5 490,791 - Dsui_0488 0.20 -0.3 490,849 + Dsui_0488 0.27 -1.1 490,899 + +0.5 490,991 - Dsui_0488 0.44 -0.4 491,078 + Dsui_0488 0.54 -2.1 491,081 - Dsui_0488 0.54 -0.0 491,182 + Dsui_0488 0.66 +0.5 491,259 + Dsui_0488 0.75 +0.5 491,300 - Dsui_0488 0.80 +0.6 491,355 - Dsui_0488 0.86 -0.2 491,357 + Dsui_0488 0.86 -2.7 491,395 + -3.1 491,436 + +0.5 491,442 - +0.1 491,568 + +0.5 491,576 - +0.0 491,576 - -0.3 491,576 - -0.8 491,577 - +0.0 491,613 - +0.1 491,615 + -1.1
Or see this region's nucleotide sequence