Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0400 and Dsui_0401 are separated by 121 nucleotides Dsui_0401 and Dsui_0402 are separated by 19 nucleotides Dsui_0402 and Dsui_0403 are separated by 82 nucleotides
Dsui_0400: Dsui_0400 - putative nucleoside-diphosphate sugar epimerase, at 397,723 to 399,585
_0400
Dsui_0401: Dsui_0401 - nucleoside-diphosphate-sugar epimerase, at 399,707 to 400,711
_0401
Dsui_0402: Dsui_0402 - glycosyl transferase, at 400,731 to 401,510
_0402
Dsui_0403: Dsui_0403 - lipopolysaccharide heptosyltransferase I, at 401,593 to 402,564
_0403
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1 at 398.725 kb on + strand, within Dsui_0400 at 398.946 kb on + strand at 398.959 kb on - strand, within Dsui_0400 at 398.985 kb on + strand, within Dsui_0400 at 399.218 kb on - strand, within Dsui_0400 at 399.325 kb on + strand, within Dsui_0400 at 399.333 kb on - strand, within Dsui_0400 at 399.501 kb on + strand at 399.570 kb on + strand at 399.603 kb on - strand at 399.631 kb on + strand at 399.639 kb on - strand at 399.639 kb on - strand at 399.660 kb on + strand at 399.686 kb on - strand at 400.103 kb on + strand at 400.220 kb on - strand, within Dsui_0401 at 400.346 kb on - strand, within Dsui_0401 at 400.492 kb on - strand, within Dsui_0401 at 400.729 kb on + strand at 401.518 kb on + strand at 401.525 kb on - strand at 401.526 kb on - strand at 401.568 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 398,725 + Dsui_0400 0.54 +0.5 398,946 + +0.5 398,959 - Dsui_0400 0.66 +1.1 398,985 + Dsui_0400 0.68 -2.5 399,218 - Dsui_0400 0.80 +1.4 399,325 + Dsui_0400 0.86 +0.5 399,333 - Dsui_0400 0.86 +1.7 399,501 + -1.1 399,570 + +0.5 399,603 - +1.1 399,631 + +0.5 399,639 - -0.4 399,639 - +0.1 399,660 + -1.5 399,686 - -0.1 400,103 + +0.5 400,220 - Dsui_0401 0.51 -1.2 400,346 - Dsui_0401 0.64 -1.1 400,492 - Dsui_0401 0.78 -2.6 400,729 + +0.5 401,518 + -1.4 401,525 - +0.5 401,526 - +0.5 401,568 + -0.2
Or see this region's nucleotide sequence