Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0001 and Dsui_0002 are separated by 67 nucleotides Dsui_0002 and Dsui_0003 are separated by 80 nucleotides Dsui_0003 and Dsui_0004 are separated by 42 nucleotides Dsui_0004 and Dsui_0005 are separated by 32 nucleotides
Dsui_0001: Dsui_0001 - aminodeoxychorismate synthase, component I, at 103 to 1,923
_0001
Dsui_0002: Dsui_0002 - putative redox protein, regulator of disulfide bond formation, at 1,991 to 2,218
_0002
Dsui_0003: Dsui_0003 - putative Zn-dependent protease, at 2,299 to 3,786
_0003
Dsui_0004: Dsui_0004 - molybdenum cofactor biosynthesis protein MoaC, at 3,829 to 4,323
_0004
Dsui_0005: Dsui_0005 - putative secreted protein, at 4,356 to 4,826
_0005
Position (kb) 2
3
4 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1.360 kb on + strand, within Dsui_0001 at 1.368 kb on - strand, within Dsui_0001 at 1.488 kb on - strand, within Dsui_0001 at 1.514 kb on + strand, within Dsui_0001 at 1.613 kb on + strand, within Dsui_0001 at 1.621 kb on - strand, within Dsui_0001 at 1.810 kb on + strand at 1.823 kb on - strand at 1.846 kb on - strand at 1.846 kb on - strand at 1.894 kb on - strand at 2.403 kb on - strand at 2.450 kb on - strand, within Dsui_0003 at 2.534 kb on - strand, within Dsui_0003 at 2.548 kb on - strand, within Dsui_0003 at 2.572 kb on - strand, within Dsui_0003 at 2.577 kb on - strand, within Dsui_0003 at 2.977 kb on - strand, within Dsui_0003 at 3.026 kb on - strand, within Dsui_0003 at 3.131 kb on - strand at 3.222 kb on - strand, within Dsui_0003 at 3.413 kb on - strand, within Dsui_0003 at 3.503 kb on - strand, within Dsui_0003 at 3.503 kb on - strand at 3.503 kb on - strand, within Dsui_0003 at 3.567 kb on - strand, within Dsui_0003 at 3.791 kb on + strand at 3.833 kb on - strand at 3.833 kb on - strand at 3.861 kb on - strand at 4.008 kb on + strand, within Dsui_0004 at 4.035 kb on + strand, within Dsui_0004 at 4.079 kb on + strand, within Dsui_0004 at 4.093 kb on - strand at 4.099 kb on + strand, within Dsui_0004 at 4.205 kb on + strand, within Dsui_0004 at 4.230 kb on - strand, within Dsui_0004 at 4.241 kb on - strand at 4.260 kb on + strand, within Dsui_0004 at 4.426 kb on - strand, within Dsui_0005 at 4.426 kb on - strand at 4.504 kb on - strand, within Dsui_0005 at 4.522 kb on - strand, within Dsui_0005 at 4.630 kb on + strand, within Dsui_0005 at 4.631 kb on - strand, within Dsui_0005 at 4.695 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.705 kb on + strand, within Dsui_0005 at 4.713 kb on - strand, within Dsui_0005 at 4.725 kb on - strand, within Dsui_0005 at 4.742 kb on + strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.750 kb on - strand, within Dsui_0005 at 4.762 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,360 + Dsui_0001 0.69 -2.9 1,368 - Dsui_0001 0.69 -0.6 1,488 - Dsui_0001 0.76 +0.1 1,514 + Dsui_0001 0.77 -2.2 1,613 + Dsui_0001 0.83 -1.2 1,621 - Dsui_0001 0.83 -1.9 1,810 + -0.6 1,823 - -0.2 1,846 - +0.6 1,846 - -0.2 1,894 - +0.3 2,403 - -2.6 2,450 - Dsui_0003 0.10 -1.4 2,534 - Dsui_0003 0.16 -0.3 2,548 - Dsui_0003 0.17 -3.1 2,572 - Dsui_0003 0.18 -2.8 2,577 - Dsui_0003 0.19 -2.7 2,977 - Dsui_0003 0.46 -2.9 3,026 - Dsui_0003 0.49 -1.6 3,131 - -0.6 3,222 - Dsui_0003 0.62 -1.1 3,413 - Dsui_0003 0.75 -1.2 3,503 - Dsui_0003 0.81 -3.0 3,503 - -0.6 3,503 - Dsui_0003 0.81 -2.7 3,567 - Dsui_0003 0.85 -1.5 3,791 + -0.4 3,833 - -0.6 3,833 - -1.2 3,861 - -1.6 4,008 + Dsui_0004 0.36 +0.0 4,035 + Dsui_0004 0.42 +0.2 4,079 + Dsui_0004 0.51 -0.2 4,093 - -0.6 4,099 + Dsui_0004 0.55 -0.1 4,205 + Dsui_0004 0.76 -0.1 4,230 - Dsui_0004 0.81 -2.2 4,241 - +0.4 4,260 + Dsui_0004 0.87 -0.0 4,426 - Dsui_0005 0.15 -0.6 4,426 - +0.4 4,504 - Dsui_0005 0.31 +0.4 4,522 - Dsui_0005 0.35 -0.6 4,630 + Dsui_0005 0.58 -0.3 4,631 - Dsui_0005 0.58 +0.4 4,695 + Dsui_0005 0.72 -0.7 4,705 + Dsui_0005 0.74 -0.2 4,705 + Dsui_0005 0.74 -0.1 4,705 + Dsui_0005 0.74 -0.7 4,705 + Dsui_0005 0.74 -0.3 4,713 - Dsui_0005 0.76 -0.6 4,725 - Dsui_0005 0.78 +0.4 4,742 + Dsui_0005 0.82 -0.3 4,750 - Dsui_0005 0.84 +0.4 4,750 - Dsui_0005 0.84 +0.4 4,750 - Dsui_0005 0.84 -1.2 4,750 - Dsui_0005 0.84 -1.9 4,762 - +0.4
Or see this region's nucleotide sequence