Experiment: PYE 30C survival rep1 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03713 and CCNA_03714 are separated by 138 nucleotides CCNA_03714 and CCNA_03715 are separated by 8 nucleotides CCNA_03715 and CCNA_03716 are separated by 58 nucleotides CCNA_03716 and CCNA_03717 overlap by 34 nucleotides
CCNA_03713: CCNA_03713 - RNA polymerase sigma-54 factor rpoN, at 3,878,345 to 3,879,838
_03713
CCNA_03714: CCNA_03714 - ABC transporter ATP-binding protein, at 3,879,977 to 3,880,735
_03714
CCNA_03715: CCNA_03715 - OstA-like protein, at 3,880,744 to 3,881,304
_03715
CCNA_03716: CCNA_03716 - LptC-related lipopolysaccharide assembly protein, at 3,881,363 to 3,882,025
_03716
CCNA_03717: CCNA_03717 - ribonuclease D, at 3,881,992 to 3,882,609
_03717
Position (kb)
3880
3881
3882 Strain fitness (log2 ratio)
-1
0
1
2 at 3879.794 kb on - strand at 3879.797 kb on + strand at 3879.805 kb on - strand at 3879.805 kb on - strand at 3879.805 kb on - strand at 3879.806 kb on - strand at 3879.822 kb on - strand at 3879.822 kb on - strand at 3879.845 kb on + strand at 3879.853 kb on - strand at 3879.853 kb on - strand at 3879.881 kb on - strand at 3879.891 kb on + strand at 3879.926 kb on - strand at 3880.002 kb on - strand at 3881.314 kb on + strand at 3881.343 kb on - strand at 3881.343 kb on - strand at 3881.361 kb on + strand at 3881.369 kb on - strand at 3881.378 kb on - strand at 3881.909 kb on - strand, within CCNA_03716 at 3881.976 kb on + strand at 3881.989 kb on + strand at 3881.990 kb on + strand at 3881.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep1 12 days remove 3,879,794 - -1.0 3,879,797 + +2.4 3,879,805 - +0.6 3,879,805 - +0.4 3,879,805 - -0.2 3,879,806 - -1.1 3,879,822 - -1.5 3,879,822 - -1.4 3,879,845 + +1.4 3,879,853 - +0.3 3,879,853 - +0.8 3,879,881 - -0.1 3,879,891 + -0.1 3,879,926 - +0.9 3,880,002 - -1.0 3,881,314 + -1.1 3,881,343 - +0.7 3,881,343 - -0.3 3,881,361 + +1.4 3,881,369 - -1.4 3,881,378 - +0.3 3,881,909 - CCNA_03716 0.82 +0.0 3,881,976 + +0.2 3,881,989 + -0.4 3,881,990 + +1.2 3,881,998 - +0.3
Or see this region's nucleotide sequence