Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03715

Experiment: PYE 30C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03713 and CCNA_03714 are separated by 138 nucleotidesCCNA_03714 and CCNA_03715 are separated by 8 nucleotidesCCNA_03715 and CCNA_03716 are separated by 58 nucleotidesCCNA_03716 and CCNA_03717 overlap by 34 nucleotides CCNA_03713: CCNA_03713 - RNA polymerase sigma-54 factor rpoN, at 3,878,345 to 3,879,838 _03713 CCNA_03714: CCNA_03714 - ABC transporter ATP-binding protein, at 3,879,977 to 3,880,735 _03714 CCNA_03715: CCNA_03715 - OstA-like protein, at 3,880,744 to 3,881,304 _03715 CCNA_03716: CCNA_03716 - LptC-related lipopolysaccharide assembly protein, at 3,881,363 to 3,882,025 _03716 CCNA_03717: CCNA_03717 - ribonuclease D, at 3,881,992 to 3,882,609 _03717 Position (kb) 3880 3881 3882Strain fitness (log2 ratio) -1 0 1 2at 3879.794 kb on - strandat 3879.797 kb on + strandat 3879.805 kb on - strandat 3879.805 kb on - strandat 3879.805 kb on - strandat 3879.806 kb on - strandat 3879.822 kb on - strandat 3879.822 kb on - strandat 3879.845 kb on + strandat 3879.853 kb on - strandat 3879.853 kb on - strandat 3879.881 kb on - strandat 3879.891 kb on + strandat 3879.926 kb on - strandat 3880.002 kb on - strandat 3881.314 kb on + strandat 3881.343 kb on - strandat 3881.343 kb on - strandat 3881.361 kb on + strandat 3881.369 kb on - strandat 3881.378 kb on - strandat 3881.909 kb on - strand, within CCNA_03716at 3881.976 kb on + strandat 3881.989 kb on + strandat 3881.990 kb on + strandat 3881.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep1 12 days
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3,879,794 - -1.0
3,879,797 + +2.4
3,879,805 - +0.6
3,879,805 - +0.4
3,879,805 - -0.2
3,879,806 - -1.1
3,879,822 - -1.5
3,879,822 - -1.4
3,879,845 + +1.4
3,879,853 - +0.3
3,879,853 - +0.8
3,879,881 - -0.1
3,879,891 + -0.1
3,879,926 - +0.9
3,880,002 - -1.0
3,881,314 + -1.1
3,881,343 - +0.7
3,881,343 - -0.3
3,881,361 + +1.4
3,881,369 - -1.4
3,881,378 - +0.3
3,881,909 - CCNA_03716 0.82 +0.0
3,881,976 + +0.2
3,881,989 + -0.4
3,881,990 + +1.2
3,881,998 - +0.3

Or see this region's nucleotide sequence