Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00770

Experiment: PYE 30C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03936 and CCNA_00768 overlap by 65 nucleotidesCCNA_00768 and CCNA_00769 overlap by 4 nucleotidesCCNA_00769 and CCNA_00770 are separated by 83 nucleotidesCCNA_00770 and CCNA_00772 are separated by 684 nucleotides CCNA_03936: CCNA_03936 - hypothetical protein, at 824,706 to 824,840 _03936 CCNA_00768: CCNA_00768 - hypothetical protein, at 824,776 to 825,000 _00768 CCNA_00769: CCNA_00769 - TetR family transcriptional regulator, at 824,997 to 825,644 _00769 CCNA_00770: CCNA_00770 - TetR family transcriptional regulator, at 825,728 to 826,336 _00770 CCNA_00772: CCNA_00772 - hypothetical protein, at 827,021 to 827,239 _00772 Position (kb) 825 826 827Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 824.732 kb on + strand, within CCNA_03936at 824.735 kb on - strand, within CCNA_03936at 824.764 kb on + strand, within CCNA_03936at 824.764 kb on + strand, within CCNA_03936at 824.772 kb on + strand, within CCNA_03936at 824.780 kb on - strandat 824.808 kb on + strandat 824.808 kb on + strandat 824.816 kb on - strandat 824.816 kb on - strandat 824.853 kb on + strand, within CCNA_00768at 824.873 kb on - strand, within CCNA_00768at 824.904 kb on - strand, within CCNA_00768at 824.925 kb on - strand, within CCNA_00768at 824.925 kb on - strand, within CCNA_00768at 824.944 kb on + strand, within CCNA_00768at 824.950 kb on - strand, within CCNA_00768at 824.950 kb on - strand, within CCNA_00768at 824.980 kb on + strandat 825.001 kb on + strandat 825.016 kb on + strandat 825.016 kb on + strandat 825.024 kb on - strandat 825.030 kb on + strandat 825.048 kb on - strandat 825.065 kb on + strand, within CCNA_00769at 825.072 kb on - strand, within CCNA_00769at 825.127 kb on + strand, within CCNA_00769at 825.127 kb on + strand, within CCNA_00769at 825.135 kb on - strand, within CCNA_00769at 825.186 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.216 kb on - strand, within CCNA_00769at 825.226 kb on - strand, within CCNA_00769at 825.266 kb on + strand, within CCNA_00769at 825.270 kb on - strand, within CCNA_00769at 825.291 kb on - strand, within CCNA_00769at 825.317 kb on + strand, within CCNA_00769at 825.326 kb on + strand, within CCNA_00769at 825.330 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.359 kb on + strand, within CCNA_00769at 825.359 kb on + strand, within CCNA_00769at 825.380 kb on + strand, within CCNA_00769at 825.386 kb on - strand, within CCNA_00769at 825.391 kb on + strand, within CCNA_00769at 825.436 kb on + strand, within CCNA_00769at 825.436 kb on + strand, within CCNA_00769at 825.436 kb on + strand, within CCNA_00769at 825.444 kb on - strand, within CCNA_00769at 825.464 kb on - strand, within CCNA_00769at 825.464 kb on - strand, within CCNA_00769at 825.517 kb on - strand, within CCNA_00769at 825.561 kb on + strand, within CCNA_00769at 825.569 kb on - strand, within CCNA_00769at 825.586 kb on - strandat 825.640 kb on + strandat 825.661 kb on + strandat 825.671 kb on - strandat 825.688 kb on - strandat 825.689 kb on - strandat 825.689 kb on - strandat 825.689 kb on - strandat 825.718 kb on - strandat 825.728 kb on - strandat 825.791 kb on - strand, within CCNA_00770at 825.793 kb on + strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.807 kb on + strand, within CCNA_00770at 825.807 kb on + strand, within CCNA_00770at 825.815 kb on - strand, within CCNA_00770at 825.875 kb on + strand, within CCNA_00770at 825.888 kb on + strand, within CCNA_00770at 825.888 kb on + strand, within CCNA_00770at 825.921 kb on + strand, within CCNA_00770at 825.932 kb on + strandat 825.951 kb on + strand, within CCNA_00770at 825.957 kb on + strand, within CCNA_00770at 825.970 kb on + strand, within CCNA_00770at 825.983 kb on + strand, within CCNA_00770at 826.018 kb on + strand, within CCNA_00770at 826.026 kb on - strand, within CCNA_00770at 826.040 kb on - strand, within CCNA_00770at 826.042 kb on + strand, within CCNA_00770at 826.122 kb on + strand, within CCNA_00770at 826.122 kb on + strand, within CCNA_00770at 826.130 kb on - strand, within CCNA_00770at 826.152 kb on - strand, within CCNA_00770at 826.154 kb on - strand, within CCNA_00770at 826.163 kb on + strand, within CCNA_00770at 826.171 kb on - strand, within CCNA_00770at 826.178 kb on + strand, within CCNA_00770at 826.206 kb on - strand, within CCNA_00770at 826.214 kb on - strand, within CCNA_00770at 826.320 kb on + strandat 826.326 kb on - strandat 826.326 kb on - strandat 826.328 kb on - strandat 826.358 kb on + strandat 826.414 kb on - strandat 826.524 kb on + strandat 826.539 kb on - strandat 826.543 kb on + strandat 826.549 kb on - strandat 826.549 kb on - strandat 826.632 kb on + strandat 826.671 kb on - strandat 826.679 kb on + strandat 826.683 kb on - strandat 826.697 kb on - strandat 826.699 kb on + strandat 826.702 kb on - strandat 826.734 kb on - strandat 826.747 kb on - strandat 826.756 kb on - strandat 826.773 kb on + strandat 826.773 kb on + strandat 826.773 kb on + strandat 826.790 kb on + strandat 826.840 kb on + strandat 826.874 kb on - strandat 826.883 kb on - strandat 826.943 kb on + strandat 826.943 kb on + strandat 826.948 kb on + strandat 827.043 kb on + strand, within CCNA_00772at 827.051 kb on - strand, within CCNA_00772at 827.103 kb on + strand, within CCNA_00772at 827.104 kb on + strand, within CCNA_00772at 827.111 kb on - strand, within CCNA_00772at 827.129 kb on + strand, within CCNA_00772at 827.134 kb on + strand, within CCNA_00772at 827.198 kb on - strand, within CCNA_00772at 827.198 kb on - strand, within CCNA_00772at 827.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep1 12 days
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824,732 + CCNA_03936 0.19 +2.3
824,735 - CCNA_03936 0.21 +1.3
824,764 + CCNA_03936 0.43 +2.0
824,764 + CCNA_03936 0.43 +1.7
824,772 + CCNA_03936 0.49 +2.9
824,780 - +1.3
824,808 + +2.7
824,808 + +2.6
824,816 - +2.1
824,816 - +1.3
824,853 + CCNA_00768 0.34 +2.0
824,873 - CCNA_00768 0.43 +1.2
824,904 - CCNA_00768 0.57 +1.6
824,925 - CCNA_00768 0.66 -0.3
824,925 - CCNA_00768 0.66 +1.2
824,944 + CCNA_00768 0.75 +2.5
824,950 - CCNA_00768 0.77 +1.5
824,950 - CCNA_00768 0.77 +1.0
824,980 + +2.1
825,001 + +0.3
825,016 + +2.2
825,016 + +2.4
825,024 - +1.3
825,030 + +2.8
825,048 - +2.1
825,065 + CCNA_00769 0.10 +2.8
825,072 - CCNA_00769 0.12 +0.1
825,127 + CCNA_00769 0.20 +2.3
825,127 + CCNA_00769 0.20 +2.5
825,135 - CCNA_00769 0.21 +2.2
825,186 + CCNA_00769 0.29 +2.6
825,208 + CCNA_00769 0.33 +2.1
825,208 + CCNA_00769 0.33 +2.9
825,208 + CCNA_00769 0.33 +2.6
825,216 - CCNA_00769 0.34 +1.6
825,226 - CCNA_00769 0.35 +1.1
825,266 + CCNA_00769 0.42 +2.4
825,270 - CCNA_00769 0.42 +3.1
825,291 - CCNA_00769 0.45 +0.3
825,317 + CCNA_00769 0.49 +2.6
825,326 + CCNA_00769 0.51 +2.4
825,330 - CCNA_00769 0.51 +1.7
825,335 - CCNA_00769 0.52 +1.2
825,335 - CCNA_00769 0.52 +2.6
825,335 - CCNA_00769 0.52 +0.1
825,359 + CCNA_00769 0.56 +2.6
825,359 + CCNA_00769 0.56 +2.4
825,380 + CCNA_00769 0.59 +2.7
825,386 - CCNA_00769 0.60 +1.0
825,391 + CCNA_00769 0.61 +2.6
825,436 + CCNA_00769 0.68 +1.9
825,436 + CCNA_00769 0.68 +2.5
825,436 + CCNA_00769 0.68 +3.1
825,444 - CCNA_00769 0.69 +1.5
825,464 - CCNA_00769 0.72 +0.5
825,464 - CCNA_00769 0.72 +0.7
825,517 - CCNA_00769 0.80 +1.1
825,561 + CCNA_00769 0.87 +3.0
825,569 - CCNA_00769 0.88 +0.9
825,586 - +0.6
825,640 + +1.5
825,661 + +0.9
825,671 - -0.7
825,688 - -0.3
825,689 - -1.0
825,689 - -0.9
825,689 - -1.8
825,718 - -0.3
825,728 - +0.1
825,791 - CCNA_00770 0.10 -0.7
825,793 + CCNA_00770 0.11 +1.2
825,801 - CCNA_00770 0.12 -1.2
825,801 - CCNA_00770 0.12 -3.2
825,801 - CCNA_00770 0.12 -0.3
825,801 - CCNA_00770 0.12 -2.0
825,807 + CCNA_00770 0.13 -0.6
825,807 + CCNA_00770 0.13 -0.9
825,815 - CCNA_00770 0.14 -1.5
825,875 + CCNA_00770 0.24 -1.9
825,888 + CCNA_00770 0.26 -0.6
825,888 + CCNA_00770 0.26 +0.2
825,921 + CCNA_00770 0.32 +0.5
825,932 + -0.3
825,951 + CCNA_00770 0.37 -3.0
825,957 + CCNA_00770 0.38 -1.4
825,970 + CCNA_00770 0.40 -0.7
825,983 + CCNA_00770 0.42 -0.1
826,018 + CCNA_00770 0.48 -0.4
826,026 - CCNA_00770 0.49 +0.9
826,040 - CCNA_00770 0.51 -0.1
826,042 + CCNA_00770 0.52 -0.7
826,122 + CCNA_00770 0.65 -1.1
826,122 + CCNA_00770 0.65 -1.1
826,130 - CCNA_00770 0.66 +0.2
826,152 - CCNA_00770 0.70 +1.1
826,154 - CCNA_00770 0.70 -1.5
826,163 + CCNA_00770 0.71 -1.4
826,171 - CCNA_00770 0.73 -0.7
826,178 + CCNA_00770 0.74 +2.5
826,206 - CCNA_00770 0.78 -1.4
826,214 - CCNA_00770 0.80 -1.1
826,320 + -0.0
826,326 - +0.1
826,326 - -1.5
826,328 - -1.2
826,358 + +0.3
826,414 - -0.1
826,524 + +0.2
826,539 - -2.4
826,543 + +1.5
826,549 - +0.3
826,549 - -0.8
826,632 + +0.1
826,671 - -1.2
826,679 + +0.2
826,683 - -0.1
826,697 - +0.4
826,699 + +0.1
826,702 - +2.5
826,734 - -0.3
826,747 - -0.3
826,756 - +0.5
826,773 + +0.7
826,773 + +0.0
826,773 + +0.7
826,790 + -0.1
826,840 + -1.0
826,874 - +0.2
826,883 - -0.2
826,943 + +0.2
826,943 + -0.1
826,948 + -0.6
827,043 + CCNA_00772 0.10 -0.9
827,051 - CCNA_00772 0.14 -0.2
827,103 + CCNA_00772 0.37 -0.5
827,104 + CCNA_00772 0.38 +1.3
827,111 - CCNA_00772 0.41 -0.6
827,129 + CCNA_00772 0.49 +1.1
827,134 + CCNA_00772 0.52 -0.3
827,198 - CCNA_00772 0.81 -0.0
827,198 - CCNA_00772 0.81 +0.4
827,242 - +0.2

Or see this region's nucleotide sequence