Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21875

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21865 and BWI76_RS21870 overlap by 4 nucleotidesBWI76_RS21870 and BWI76_RS21875 are separated by 297 nucleotidesBWI76_RS21875 and BWI76_RS21880 are separated by 116 nucleotides BWI76_RS21865: BWI76_RS21865 - hypothetical protein, at 4,568,938 to 4,570,542 _RS21865 BWI76_RS21870: BWI76_RS21870 - hypothetical protein, at 4,570,539 to 4,570,943 _RS21870 BWI76_RS21875: BWI76_RS21875 - LysR family transcriptional regulator, at 4,571,241 to 4,572,152 _RS21875 BWI76_RS21880: BWI76_RS21880 - agmatinase, at 4,572,269 to 4,573,219 _RS21880 Position (kb) 4571 4572 4573Strain fitness (log2 ratio) -2 -1 0 1 2at 4570.257 kb on - strand, within BWI76_RS21865at 4570.264 kb on - strand, within BWI76_RS21865at 4570.305 kb on + strand, within BWI76_RS21865at 4570.383 kb on - strandat 4570.387 kb on + strandat 4570.389 kb on - strandat 4570.389 kb on - strandat 4570.436 kb on + strandat 4570.439 kb on + strandat 4570.441 kb on - strandat 4570.445 kb on + strandat 4570.451 kb on - strandat 4570.459 kb on - strandat 4570.462 kb on - strandat 4570.472 kb on - strandat 4570.540 kb on + strandat 4570.550 kb on + strandat 4570.664 kb on + strand, within BWI76_RS21870at 4570.664 kb on + strand, within BWI76_RS21870at 4570.664 kb on + strand, within BWI76_RS21870at 4570.664 kb on + strand, within BWI76_RS21870at 4570.664 kb on + strand, within BWI76_RS21870at 4570.664 kb on + strand, within BWI76_RS21870at 4570.672 kb on - strand, within BWI76_RS21870at 4570.682 kb on - strand, within BWI76_RS21870at 4570.694 kb on - strand, within BWI76_RS21870at 4570.699 kb on + strand, within BWI76_RS21870at 4570.707 kb on - strand, within BWI76_RS21870at 4570.707 kb on - strand, within BWI76_RS21870at 4570.731 kb on - strand, within BWI76_RS21870at 4570.793 kb on - strand, within BWI76_RS21870at 4570.807 kb on + strand, within BWI76_RS21870at 4570.807 kb on + strand, within BWI76_RS21870at 4570.812 kb on + strand, within BWI76_RS21870at 4570.820 kb on - strand, within BWI76_RS21870at 4571.023 kb on + strandat 4571.091 kb on + strandat 4571.091 kb on + strandat 4571.091 kb on + strandat 4571.164 kb on + strandat 4571.236 kb on + strandat 4571.236 kb on + strandat 4571.244 kb on - strandat 4571.248 kb on + strandat 4571.248 kb on + strandat 4571.248 kb on + strandat 4571.248 kb on + strandat 4571.248 kb on + strandat 4571.252 kb on + strandat 4571.257 kb on + strandat 4571.257 kb on + strandat 4571.257 kb on + strandat 4571.265 kb on - strandat 4571.265 kb on - strandat 4571.265 kb on - strandat 4571.274 kb on - strandat 4571.274 kb on - strandat 4571.275 kb on - strandat 4571.277 kb on - strandat 4571.293 kb on + strandat 4571.294 kb on + strandat 4571.303 kb on + strandat 4571.309 kb on + strandat 4571.310 kb on - strandat 4571.311 kb on - strandat 4571.311 kb on - strandat 4571.317 kb on - strandat 4571.334 kb on - strand, within BWI76_RS21875at 4571.396 kb on + strand, within BWI76_RS21875at 4571.401 kb on + strand, within BWI76_RS21875at 4571.407 kb on + strand, within BWI76_RS21875at 4571.453 kb on + strand, within BWI76_RS21875at 4571.460 kb on - strand, within BWI76_RS21875at 4571.491 kb on + strand, within BWI76_RS21875at 4571.562 kb on - strand, within BWI76_RS21875at 4571.619 kb on + strand, within BWI76_RS21875at 4571.626 kb on + strand, within BWI76_RS21875at 4571.626 kb on + strand, within BWI76_RS21875at 4571.634 kb on - strand, within BWI76_RS21875at 4571.875 kb on + strand, within BWI76_RS21875at 4571.974 kb on - strand, within BWI76_RS21875at 4571.974 kb on - strand, within BWI76_RS21875at 4572.084 kb on + strandat 4572.552 kb on + strand, within BWI76_RS21880at 4572.562 kb on + strandat 4572.703 kb on + strand, within BWI76_RS21880at 4572.841 kb on + strand, within BWI76_RS21880at 4572.841 kb on + strand, within BWI76_RS21880at 4572.849 kb on - strand, within BWI76_RS21880at 4572.849 kb on - strand, within BWI76_RS21880at 4572.892 kb on + strand, within BWI76_RS21880at 4572.900 kb on - strand, within BWI76_RS21880at 4572.900 kb on - strandat 4572.955 kb on + strand, within BWI76_RS21880at 4573.006 kb on + strand, within BWI76_RS21880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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4,570,257 - BWI76_RS21865 0.82 +0.2
4,570,264 - BWI76_RS21865 0.83 +0.4
4,570,305 + BWI76_RS21865 0.85 -0.2
4,570,383 - +0.1
4,570,387 + +0.4
4,570,389 - +0.1
4,570,389 - -1.4
4,570,436 + -0.5
4,570,439 + -0.7
4,570,441 - -2.2
4,570,445 + -2.4
4,570,451 - -0.3
4,570,459 - -2.0
4,570,462 - +0.5
4,570,472 - -0.9
4,570,540 + +0.1
4,570,550 + +1.0
4,570,664 + BWI76_RS21870 0.31 -0.6
4,570,664 + BWI76_RS21870 0.31 +0.3
4,570,664 + BWI76_RS21870 0.31 -0.3
4,570,664 + BWI76_RS21870 0.31 -2.4
4,570,664 + BWI76_RS21870 0.31 +0.0
4,570,664 + BWI76_RS21870 0.31 -0.2
4,570,672 - BWI76_RS21870 0.33 +0.0
4,570,682 - BWI76_RS21870 0.35 +1.0
4,570,694 - BWI76_RS21870 0.38 +1.1
4,570,699 + BWI76_RS21870 0.40 -0.2
4,570,707 - BWI76_RS21870 0.41 +1.0
4,570,707 - BWI76_RS21870 0.41 -0.4
4,570,731 - BWI76_RS21870 0.47 +0.8
4,570,793 - BWI76_RS21870 0.63 +0.3
4,570,807 + BWI76_RS21870 0.66 +2.0
4,570,807 + BWI76_RS21870 0.66 +2.0
4,570,812 + BWI76_RS21870 0.67 +0.0
4,570,820 - BWI76_RS21870 0.69 +0.7
4,571,023 + -1.3
4,571,091 + -0.1
4,571,091 + -1.7
4,571,091 + +2.0
4,571,164 + -1.6
4,571,236 + -0.2
4,571,236 + -0.4
4,571,244 - +0.7
4,571,248 + -0.3
4,571,248 + +0.2
4,571,248 + -1.4
4,571,248 + -1.5
4,571,248 + -0.3
4,571,252 + +0.2
4,571,257 + -0.1
4,571,257 + +0.3
4,571,257 + +1.4
4,571,265 - -0.6
4,571,265 - -0.3
4,571,265 - -1.3
4,571,274 - +0.6
4,571,274 - -1.1
4,571,275 - -0.9
4,571,277 - +0.7
4,571,293 + +0.6
4,571,294 + -0.1
4,571,303 + +1.2
4,571,309 + +2.4
4,571,310 - -0.4
4,571,311 - +0.2
4,571,311 - -0.4
4,571,317 - +0.3
4,571,334 - BWI76_RS21875 0.10 +0.0
4,571,396 + BWI76_RS21875 0.17 -0.8
4,571,401 + BWI76_RS21875 0.18 -1.0
4,571,407 + BWI76_RS21875 0.18 -0.9
4,571,453 + BWI76_RS21875 0.23 +0.1
4,571,460 - BWI76_RS21875 0.24 -1.2
4,571,491 + BWI76_RS21875 0.27 +0.1
4,571,562 - BWI76_RS21875 0.35 +0.7
4,571,619 + BWI76_RS21875 0.41 -1.2
4,571,626 + BWI76_RS21875 0.42 -0.1
4,571,626 + BWI76_RS21875 0.42 -0.6
4,571,634 - BWI76_RS21875 0.43 -0.2
4,571,875 + BWI76_RS21875 0.70 -0.7
4,571,974 - BWI76_RS21875 0.80 -0.8
4,571,974 - BWI76_RS21875 0.80 +0.5
4,572,084 + +0.1
4,572,552 + BWI76_RS21880 0.30 -1.0
4,572,562 + +0.4
4,572,703 + BWI76_RS21880 0.46 +1.2
4,572,841 + BWI76_RS21880 0.60 +2.0
4,572,841 + BWI76_RS21880 0.60 +1.0
4,572,849 - BWI76_RS21880 0.61 -0.1
4,572,849 - BWI76_RS21880 0.61 +0.0
4,572,892 + BWI76_RS21880 0.66 +1.0
4,572,900 - BWI76_RS21880 0.66 +0.3
4,572,900 - +0.2
4,572,955 + BWI76_RS21880 0.72 +0.5
4,573,006 + BWI76_RS21880 0.77 -0.2

Or see this region's nucleotide sequence