Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2100

Experiment: 6 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2099 and DvMF_2100 are separated by 506 nucleotidesDvMF_2100 and DvMF_2101 are separated by 329 nucleotides DvMF_2099: DvMF_2099 - glutamine synthetase, type I (RefSeq), at 2,616,009 to 2,617,352 _2099 DvMF_2100: DvMF_2100 - hypothetical protein (RefSeq), at 2,617,859 to 2,618,833 _2100 DvMF_2101: DvMF_2101 - major facilitator superfamily MFS_1 (RefSeq), at 2,619,163 to 2,620,602 _2101 Position (kb) 2617 2618 2619Strain fitness (log2 ratio) -1 0 1 2at 2617.101 kb on + strand, within DvMF_2099at 2617.248 kb on + strandat 2617.264 kb on + strandat 2617.274 kb on + strandat 2617.491 kb on + strandat 2617.607 kb on + strandat 2617.628 kb on + strandat 2617.631 kb on - strandat 2617.645 kb on - strandat 2617.685 kb on + strandat 2617.693 kb on - strandat 2617.797 kb on - strandat 2617.853 kb on - strandat 2617.855 kb on + strandat 2617.870 kb on - strandat 2617.877 kb on - strandat 2617.925 kb on - strandat 2618.182 kb on + strand, within DvMF_2100at 2618.190 kb on - strand, within DvMF_2100at 2618.510 kb on - strand, within DvMF_2100at 2618.834 kb on - strandat 2618.893 kb on - strandat 2618.942 kb on + strandat 2618.950 kb on - strandat 2618.980 kb on - strandat 2619.085 kb on - strandat 2619.576 kb on - strand, within DvMF_2101

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 30C
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2,617,101 + DvMF_2099 0.81 +0.0
2,617,248 + +0.7
2,617,264 + -0.6
2,617,274 + -0.7
2,617,491 + +0.8
2,617,607 + +0.8
2,617,628 + +0.6
2,617,631 - +0.5
2,617,645 - +2.0
2,617,685 + +0.6
2,617,693 - +0.9
2,617,797 - +0.7
2,617,853 - +1.2
2,617,855 + +0.6
2,617,870 - +0.2
2,617,877 - +0.6
2,617,925 - +1.6
2,618,182 + DvMF_2100 0.33 +0.3
2,618,190 - DvMF_2100 0.34 +1.0
2,618,510 - DvMF_2100 0.67 +1.3
2,618,834 - +0.8
2,618,893 - +0.4
2,618,942 + +1.4
2,618,950 - +0.2
2,618,980 - +0.5
2,619,085 - +1.9
2,619,576 - DvMF_2101 0.29 +1.0

Or see this region's nucleotide sequence