Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1522

Experiment: 6 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1520 and DvMF_1521 are separated by 125 nucleotidesDvMF_1521 and DvMF_1522 are separated by 12 nucleotidesDvMF_1522 and DvMF_1523 are separated by 16 nucleotidesDvMF_1523 and DvMF_1524 are separated by 215 nucleotides DvMF_1520: DvMF_1520 - NADH ubiquinone oxidoreductase 20 kDa subunit (RefSeq), at 1,876,326 to 1,876,799 _1520 DvMF_1521: DvMF_1521 - hypothetical protein (RefSeq), at 1,876,925 to 1,877,317 _1521 DvMF_1522: DvMF_1522 - NADH-ubiquinone oxidoreductase chain 49kDa (RefSeq), at 1,877,330 to 1,878,406 _1522 DvMF_1523: DvMF_1523 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,878,423 to 1,878,818 _1523 DvMF_1524: DvMF_1524 - flavin reductase domain protein FMN-binding (RefSeq), at 1,879,034 to 1,879,681 _1524 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -1 0 1at 1876.946 kb on - strandat 1876.946 kb on - strandat 1876.957 kb on + strandat 1876.987 kb on + strand, within DvMF_1521at 1877.116 kb on + strand, within DvMF_1521at 1877.666 kb on - strand, within DvMF_1522at 1877.970 kb on + strand, within DvMF_1522at 1878.079 kb on + strand, within DvMF_1522at 1878.184 kb on - strand, within DvMF_1522at 1878.459 kb on + strandat 1878.484 kb on - strand, within DvMF_1523at 1878.484 kb on - strand, within DvMF_1523at 1878.484 kb on - strand, within DvMF_1523at 1878.589 kb on + strand, within DvMF_1523at 1879.039 kb on - strandat 1879.118 kb on - strand, within DvMF_1524at 1879.367 kb on + strand, within DvMF_1524at 1879.375 kb on - strand, within DvMF_1524at 1879.375 kb on - strand, within DvMF_1524

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 30C
remove
1,876,946 - -0.4
1,876,946 - -0.3
1,876,957 + -0.2
1,876,987 + DvMF_1521 0.16 -0.5
1,877,116 + DvMF_1521 0.49 -0.2
1,877,666 - DvMF_1522 0.31 -0.4
1,877,970 + DvMF_1522 0.59 -0.1
1,878,079 + DvMF_1522 0.70 -0.1
1,878,184 - DvMF_1522 0.79 -0.3
1,878,459 + +0.1
1,878,484 - DvMF_1523 0.15 +1.0
1,878,484 - DvMF_1523 0.15 +0.1
1,878,484 - DvMF_1523 0.15 -0.3
1,878,589 + DvMF_1523 0.42 -0.1
1,879,039 - +1.1
1,879,118 - DvMF_1524 0.13 +0.7
1,879,367 + DvMF_1524 0.51 +0.7
1,879,375 - DvMF_1524 0.53 +0.2
1,879,375 - DvMF_1524 0.53 +1.0

Or see this region's nucleotide sequence