Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1431

Experiment: 6 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1430 and DvMF_1431 are separated by 274 nucleotidesDvMF_1431 and DvMF_1432 are separated by 360 nucleotides DvMF_1430: DvMF_1430 - major facilitator superfamily MFS_1 (RefSeq), at 1,749,795 to 1,751,288 _1430 DvMF_1431: DvMF_1431 - radical SAM enzyme, Cfr family (RefSeq), at 1,751,563 to 1,752,666 _1431 DvMF_1432: DvMF_1432 - hypothetical protein (RefSeq), at 1,753,027 to 1,754,031 _1432 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -1 0 1 2at 1750.588 kb on + strand, within DvMF_1430at 1751.035 kb on - strand, within DvMF_1430at 1751.035 kb on - strand, within DvMF_1430at 1751.077 kb on + strand, within DvMF_1430at 1751.507 kb on + strandat 1751.507 kb on + strandat 1751.602 kb on + strandat 1751.814 kb on + strand, within DvMF_1431at 1752.474 kb on + strand, within DvMF_1431at 1752.482 kb on - strand, within DvMF_1431at 1752.482 kb on - strand, within DvMF_1431at 1752.487 kb on - strand, within DvMF_1431at 1752.509 kb on - strand, within DvMF_1431at 1752.634 kb on - strandat 1753.028 kb on - strandat 1753.474 kb on + strand, within DvMF_1432at 1753.490 kb on - strand, within DvMF_1432at 1753.629 kb on - strand, within DvMF_1432

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 30C
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1,750,588 + DvMF_1430 0.53 +1.3
1,751,035 - DvMF_1430 0.83 +1.0
1,751,035 - DvMF_1430 0.83 +0.5
1,751,077 + DvMF_1430 0.86 +0.5
1,751,507 + +0.5
1,751,507 + +0.0
1,751,602 + +0.3
1,751,814 + DvMF_1431 0.23 -0.3
1,752,474 + DvMF_1431 0.83 +0.2
1,752,482 - DvMF_1431 0.83 -0.1
1,752,482 - DvMF_1431 0.83 +0.5
1,752,487 - DvMF_1431 0.84 +0.9
1,752,509 - DvMF_1431 0.86 -0.4
1,752,634 - -0.1
1,753,028 - +0.9
1,753,474 + DvMF_1432 0.44 -0.1
1,753,490 - DvMF_1432 0.46 +1.3
1,753,629 - DvMF_1432 0.60 +2.1

Or see this region's nucleotide sequence